| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is recJ [H]
Identifier: 170078344
GI number: 170078344
Start: 1823332
End: 1825617
Strand: Reverse
Name: recJ [H]
Synonym: SYNPCC7002_A1737
Alternate gene names: 170078344
Gene position: 1825617-1823332 (Counterclockwise)
Preceding gene: 170078345
Following gene: 170078342
Centisome position: 60.69
GC content: 50.09
Gene sequence:
>2286_bases GTGAATTGGCAGGTTTTAGCAACACCAGAGGTGCCGGACTCTTTTATTCGGCGGGTCGAAATCCTGACCGATGGCAAAGG CGATCGCCATTTAGCCCAACTCCTATGGCAACGGGGCTTTAATGATGAAAATACCTTAGCTGGCTTCCTCAACCCAGAGG CTTACGCGCCAACTTCTGCCTTTGCCTTTGGCCAAGAAATGAAACGGGCGATTCACCGCTTGATACAAGCGAAAGAACGG GGTGAAAAGGTGGCCATCTGGGGAGACTTTGATGCCGATGGCGTCACCGCGACGAGTGTTTTATGGGAAGGATTAGGGCA ATTTTTTTCCCAAGAAACCCAATTAATCTATTACATTCCCAATCGTTTAACGGAATCCCACGGCTTAAATAATCCAGGCA TTGACCGCCTGAAAACTTGGGGCGCAAGTTTAATTATCATCTGCGATACTGGTAGCACAAACTTGACAGAAATTGCCCAC GCAAAAAGCCTTGATATTGACCTGATTATTACCGATCATCACACTTTACCGGAAACCAGACCCGACGTTTTATCGATTAT TAATCCCCGTTATTTTGCTGAAAATCATCCCCTATTTCATCTGTCTGGGGTTGCCGTGGCCTATAAATTAGTTGAGGCGT TATCGGAAACTCTACCGGATCCGACGAGGCCGCCCGTTACCGATCTCTTAGACCTCGTGGCGATTGGTTTAATTGCAGAT TTAGTGGCCCTCAAAGGAGATTGCCGTTATCTGGCCCAGGTGGGGATCCAAGCCCTGCAAAAACAAACAAACCCGAAGAC TGTCGTCCATCCAGGCATTAAAGCGCTCCTCGACAATTGCCATAAAACCGGCGATCGCCCAACCGATATTTCCTTTGGCA TCGGGCCACGAATTAATGCCGTCAGTCGCATCTACGGCGACGCAAGCTTTTGTGTGGAACTGCTCACCAGTCGTGAACGG GGCCGCTGTGGTTACCTCGCTCAACAGACGGAACTCGCCAATGCCCGTCGTAAAGAGATTCAACAAAAGGTCGTCCAGCA GGCCAAGGCCCAGATCGAAACCCTAGATTTATCGACCACGAGCGTTTTAGTGCTGTGTGATGCCCAGTGGCAGGGGGGCG TGCTGGGATTGGTAGCGAGTCAAATTGCCCAAACTTTTGGCCGCCCGACCATTCTTTTAACCTACGATCCGGAGCAAGAC CTCTGGAAAGGATCCGCCCGTTCCGCCCACGGCATCGATTTGTATGATTTGGTACAAGCCCAAGGCCATCTACTGCATCG CTTTGGCGGGCATCCCTTTGCGGCGGGTTTGAGTGTGCGGCCCGAAAATTTGGCGATGTTTAAAACAGCCATTAATCAGC AGGCCCGGCAACAGTGGGGGAGTTCCATTGAAACGCACCAGGGAGAAATCACCATTGATCTTGTGGTGGCGATCGCCGAC CTGGGGGAATCATTATTTCAATCTTTAGAATGCCTAGAACCCTTTGGGATGGGGAATCCAAAACCAAAATTATTGATCAA AGACTGTGGTCTGACGGTGACTGGGTTTAGCAAATTGCGGGACAAATTTAATCGCAAACTGAATTATTTCAAAACAAACT TTGAACTTTGGGATGAAACGGATCAAATTAGTGGCATTTGGTGGGGCGGCCATCCCGACGATTTAACCCAGGGGGCCGGG TTGGACGTGGTAGTTGAGCTAGACCGCAAAGAGGCCCAGACTCAGGATCAATATTTTGTGCGTCTCTTGGCTGTGGCCCC GACCGCAAAGATCGCCGCAGAATCGGCCCCACAAACATTACTCGATTTTCGCCATCAGTCTCTCCCCCAGGAAGCTTTGG ATCAGTATGTGTTGCAAAAGGATTGCCCTGTCACTTGGCAGGAACTTTATGGGAATTATCAGCAGGCGATCGCCACGGGA AAACCCTTGGCCCTCCACTATGCTTCCCCAACTTCCCGTACTCCGGAGCAGTGTTTTAAAACGCTGATTGGCATTGCGAA ATATGTACTGGCCCAGGATCAAACGGTTTCCCTGGCTGACCTGAAAGCAAAACTCCATTGCGGCGATCGCCCCTTAGATT TCGGTCTAAAGGCTTTAAAGAATGTCGGCTTTGTCGCTGAAATTCAAGGCGAACAAGTGCGTTTTCAGCAGACGACCGTC ACTCCTGATCCAGAAGCCTTTGCCCAATTTAAACAGGCGATCCTCGAAGAGCAATTTCAAAGGCAGTATTTTGCCCAGGC TCCCCTCACCGTTATCCAAGCCACCCTCGAAAAAATTCCGGTCTAA
Upstream 100 bases:
>100_bases GCGAAGCTTGGAAATTATATTTCTATAATTTTACCGTAATTGGCTATTGAGCAAAATCTAACAGTCAAGCCATTAAAAAC CCAGAGGAAAAAGCATTAAA
Downstream 100 bases:
>100_bases ATCACAAGGCTTACTCCGGCGCGGTCTGTAACTGTTGGTAGAAAGTTTGGGCTTGGTCAAAATTTGGGGCGATCGCCAGG GCTTGGTTCACCTGAGTCAA
Product: single-strand-DNA-specific exonuclease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 761; Mature: 761
Protein sequence:
>761_residues MNWQVLATPEVPDSFIRRVEILTDGKGDRHLAQLLWQRGFNDENTLAGFLNPEAYAPTSAFAFGQEMKRAIHRLIQAKER GEKVAIWGDFDADGVTATSVLWEGLGQFFSQETQLIYYIPNRLTESHGLNNPGIDRLKTWGASLIIICDTGSTNLTEIAH AKSLDIDLIITDHHTLPETRPDVLSIINPRYFAENHPLFHLSGVAVAYKLVEALSETLPDPTRPPVTDLLDLVAIGLIAD LVALKGDCRYLAQVGIQALQKQTNPKTVVHPGIKALLDNCHKTGDRPTDISFGIGPRINAVSRIYGDASFCVELLTSRER GRCGYLAQQTELANARRKEIQQKVVQQAKAQIETLDLSTTSVLVLCDAQWQGGVLGLVASQIAQTFGRPTILLTYDPEQD LWKGSARSAHGIDLYDLVQAQGHLLHRFGGHPFAAGLSVRPENLAMFKTAINQQARQQWGSSIETHQGEITIDLVVAIAD LGESLFQSLECLEPFGMGNPKPKLLIKDCGLTVTGFSKLRDKFNRKLNYFKTNFELWDETDQISGIWWGGHPDDLTQGAG LDVVVELDRKEAQTQDQYFVRLLAVAPTAKIAAESAPQTLLDFRHQSLPQEALDQYVLQKDCPVTWQELYGNYQQAIATG KPLALHYASPTSRTPEQCFKTLIGIAKYVLAQDQTVSLADLKAKLHCGDRPLDFGLKALKNVGFVAEIQGEQVRFQQTTV TPDPEAFAQFKQAILEEQFQRQYFAQAPLTVIQATLEKIPV
Sequences:
>Translated_761_residues MNWQVLATPEVPDSFIRRVEILTDGKGDRHLAQLLWQRGFNDENTLAGFLNPEAYAPTSAFAFGQEMKRAIHRLIQAKER GEKVAIWGDFDADGVTATSVLWEGLGQFFSQETQLIYYIPNRLTESHGLNNPGIDRLKTWGASLIIICDTGSTNLTEIAH AKSLDIDLIITDHHTLPETRPDVLSIINPRYFAENHPLFHLSGVAVAYKLVEALSETLPDPTRPPVTDLLDLVAIGLIAD LVALKGDCRYLAQVGIQALQKQTNPKTVVHPGIKALLDNCHKTGDRPTDISFGIGPRINAVSRIYGDASFCVELLTSRER GRCGYLAQQTELANARRKEIQQKVVQQAKAQIETLDLSTTSVLVLCDAQWQGGVLGLVASQIAQTFGRPTILLTYDPEQD LWKGSARSAHGIDLYDLVQAQGHLLHRFGGHPFAAGLSVRPENLAMFKTAINQQARQQWGSSIETHQGEITIDLVVAIAD LGESLFQSLECLEPFGMGNPKPKLLIKDCGLTVTGFSKLRDKFNRKLNYFKTNFELWDETDQISGIWWGGHPDDLTQGAG LDVVVELDRKEAQTQDQYFVRLLAVAPTAKIAAESAPQTLLDFRHQSLPQEALDQYVLQKDCPVTWQELYGNYQQAIATG KPLALHYASPTSRTPEQCFKTLIGIAKYVLAQDQTVSLADLKAKLHCGDRPLDFGLKALKNVGFVAEIQGEQVRFQQTTV TPDPEAFAQFKQAILEEQFQRQYFAQAPLTVIQATLEKIPV >Mature_761_residues MNWQVLATPEVPDSFIRRVEILTDGKGDRHLAQLLWQRGFNDENTLAGFLNPEAYAPTSAFAFGQEMKRAIHRLIQAKER GEKVAIWGDFDADGVTATSVLWEGLGQFFSQETQLIYYIPNRLTESHGLNNPGIDRLKTWGASLIIICDTGSTNLTEIAH AKSLDIDLIITDHHTLPETRPDVLSIINPRYFAENHPLFHLSGVAVAYKLVEALSETLPDPTRPPVTDLLDLVAIGLIAD LVALKGDCRYLAQVGIQALQKQTNPKTVVHPGIKALLDNCHKTGDRPTDISFGIGPRINAVSRIYGDASFCVELLTSRER GRCGYLAQQTELANARRKEIQQKVVQQAKAQIETLDLSTTSVLVLCDAQWQGGVLGLVASQIAQTFGRPTILLTYDPEQD LWKGSARSAHGIDLYDLVQAQGHLLHRFGGHPFAAGLSVRPENLAMFKTAINQQARQQWGSSIETHQGEITIDLVVAIAD LGESLFQSLECLEPFGMGNPKPKLLIKDCGLTVTGFSKLRDKFNRKLNYFKTNFELWDETDQISGIWWGGHPDDLTQGAG LDVVVELDRKEAQTQDQYFVRLLAVAPTAKIAAESAPQTLLDFRHQSLPQEALDQYVLQKDCPVTWQELYGNYQQAIATG KPLALHYASPTSRTPEQCFKTLIGIAKYVLAQDQTVSLADLKAKLHCGDRPLDFGLKALKNVGFVAEIQGEQVRFQQTTV TPDPEAFAQFKQAILEEQFQRQYFAQAPLTVIQATLEKIPV
Specific function: Putative single-stranded-DNA-specific exonuclease. RecA thread formation during DNA double-strand break repair requires RecJ or AadAB [H]
COG id: COG0608
COG function: function code L; Single-stranded DNA-specific exonuclease
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 OB DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1789259, Length=454, Percent_Identity=32.15859030837, Blast_Score=207, Evalue=3e-54,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003156 - InterPro: IPR001667 - InterPro: IPR004610 - InterPro: IPR018779 [H]
Pfam domain/function: PF01368 DHH; PF02272 DHHA1; PF10141 ssDNA-exonuc_C [H]
EC number: 3.1.-.- [C]
Molecular weight: Translated: 84448; Mature: 84448
Theoretical pI: Translated: 5.82; Mature: 5.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNWQVLATPEVPDSFIRRVEILTDGKGDRHLAQLLWQRGFNDENTLAGFLNPEAYAPTSA CCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHH FAFGQEMKRAIHRLIQAKERGEKVAIWGDFDADGVTATSVLWEGLGQFFSQETQLIYYIP HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC NRLTESHGLNNPGIDRLKTWGASLIIICDTGSTNLTEIAHAKSLDIDLIITDHHTLPETR CHHHHHCCCCCCCHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCEEEEEECCCCCCCCC PDVLSIINPRYFAENHPLFHLSGVAVAYKLVEALSETLPDPTRPPVTDLLDLVAIGLIAD CHHHHHCCCHHCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH LVALKGDCRYLAQVGIQALQKQTNPKTVVHPGIKALLDNCHKTGDRPTDISFGIGPRINA HHHHCCCHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHH VSRIYGDASFCVELLTSRERGRCGYLAQQTELANARRKEIQQKVVQQAKAQIETLDLSTT HHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC SVLVLCDAQWQGGVLGLVASQIAQTFGRPTILLTYDPEQDLWKGSARSAHGIDLYDLVQA EEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCCCCCCCCHHHHHHHH QGHLLHRFGGHPFAAGLSVRPENLAMFKTAINQQARQQWGSSIETHQGEITIDLVVAIAD HHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHH LGESLFQSLECLEPFGMGNPKPKLLIKDCGLTVTGFSKLRDKFNRKLNYFKTNFELWDET HHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEECHHHHHHHHHHHHHHEECCCEECCCC DQISGIWWGGHPDDLTQGAGLDVVVELDRKEAQTQDQYFVRLLAVAPTAKIAAESAPQTL CCCCEEECCCCCHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHH LDFRHQSLPQEALDQYVLQKDCPVTWQELYGNYQQAIATGKPLALHYASPTSRTPEQCFK HHHHHHCCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHCCCCEEEEECCCCCCCHHHHHH TLIGIAKYVLAQDQTVSLADLKAKLHCGDRPLDFGLKALKNVGFVAEIQGEQVRFQQTTV HHHHHHHHHHHCCCCEEHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCEEEEEECCC TPDPEAFAQFKQAILEEQFQRQYFAQAPLTVIQATLEKIPV CCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCC >Mature Secondary Structure MNWQVLATPEVPDSFIRRVEILTDGKGDRHLAQLLWQRGFNDENTLAGFLNPEAYAPTSA CCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHH FAFGQEMKRAIHRLIQAKERGEKVAIWGDFDADGVTATSVLWEGLGQFFSQETQLIYYIP HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC NRLTESHGLNNPGIDRLKTWGASLIIICDTGSTNLTEIAHAKSLDIDLIITDHHTLPETR CHHHHHCCCCCCCHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCEEEEEECCCCCCCCC PDVLSIINPRYFAENHPLFHLSGVAVAYKLVEALSETLPDPTRPPVTDLLDLVAIGLIAD CHHHHHCCCHHCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH LVALKGDCRYLAQVGIQALQKQTNPKTVVHPGIKALLDNCHKTGDRPTDISFGIGPRINA HHHHCCCHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHH VSRIYGDASFCVELLTSRERGRCGYLAQQTELANARRKEIQQKVVQQAKAQIETLDLSTT HHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC SVLVLCDAQWQGGVLGLVASQIAQTFGRPTILLTYDPEQDLWKGSARSAHGIDLYDLVQA EEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCCCCCCCCHHHHHHHH QGHLLHRFGGHPFAAGLSVRPENLAMFKTAINQQARQQWGSSIETHQGEITIDLVVAIAD HHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHH LGESLFQSLECLEPFGMGNPKPKLLIKDCGLTVTGFSKLRDKFNRKLNYFKTNFELWDET HHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEECHHHHHHHHHHHHHHEECCCEECCCC DQISGIWWGGHPDDLTQGAGLDVVVELDRKEAQTQDQYFVRLLAVAPTAKIAAESAPQTL CCCCEEECCCCCHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHH LDFRHQSLPQEALDQYVLQKDCPVTWQELYGNYQQAIATGKPLALHYASPTSRTPEQCFK HHHHHHCCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHCCCCEEEEECCCCCCCHHHHHH TLIGIAKYVLAQDQTVSLADLKAKLHCGDRPLDFGLKALKNVGFVAEIQGEQVRFQQTTV HHHHHHHHHHHCCCCEEHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCEEEEEECCC TPDPEAFAQFKQAILEEQFQRQYFAQAPLTVIQATLEKIPV CCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]