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The map label for this gene is ycbY [C]

Identifier: 170078288

GI number: 170078288

Start: 1763613

End: 1764737

Strand: Direct

Name: ycbY [C]

Synonym: SYNPCC7002_A1681

Alternate gene names: 170078288

Gene position: 1763613-1764737 (Clockwise)

Preceding gene: 170078286

Following gene: 170078289

Centisome position: 58.63

GC content: 51.82

Gene sequence:

>1125_bases
ATGCAAACCTATTTTGCAACGGTAGCCCAGGGCATTGAGGAGCTTGCGGCCCAGGAACTGACAAACCTCGGTGCCCAGGC
GGTGAAAACAGAATATTGCGGGGTCTCTTTTCAAGGCGATCGCCAGTTATTGTACAAAGTCAATCTCTGGTCACGGTTGG
CGTTTCGGGTGTTGGTACAGATTAGAAAAGTTAAAGCATTTACGGCCAAGGAACTCTATCGGGGCGTACAAAGCATTGAC
TGGTCTGAATACCTCGCACCCAACCAAACCATTGCCGTCACCTGTACCGGTAAAAATAAAAATCTCAATCACACCCATTT
CACCGCCCTCCAAGTAAAAAATGCGATCATCGATCAACAGCGGGATCAATTTGGCGATCGCTCCAGTGTCAATGTCGAAG
ATCCTGACGTGCTGATCAATGCCCACATTCGCGATAACCGTTGCACTATCAGCCTCGATAGCTCCGGCCATAGTTTGCAC
CGTCGGGGTTATCGGCCCGCCATGGGGAAAGCACCCCTCAAGGAAAATTTTGCCGCTGGTCTCCTGGATCTCGCCGAATG
GACGCCGGATCTGCCCCTCGTGGATCCCCTCTGTGGCTCCGGCACCTTTGTCATTGAAGCCGCCCTAAAAAGTTTGAATT
TTGCCCCCGGCCTTTTCCAGGGGGATTTTGGCTTTCAGCATTGGCAAGATTTTGATGCCGAGCTTTGGCAAACCCTCCTC
AACGAGGCCGAATATGCCACCAAAGACCAACTGCAACAGCCAATCATTGGCCAAGACCGCGATCAAGAAGTGATTCAACA
GGCTTGGACGAATGCGGAAAATTGTGGCGTTGCCGACCATATCCAACTGGCTTGTCGGGAACTGGAACAAGTAGAAGCCC
CTGCCGACCGTGGCGTGATTATCTGCAATCCGCCCTATGGCCATCGTCTCGGTGCTGATGAAGATCTAGGGCTGCTTTAT
AAACGCATTGGCGATATTTTCAAACAGCGGTTTAAGGGCTGGACGGGCTATATTCTTACGGGGAATGCAGAACTGGCGAA
ACGGGTCGGACTGCGGGCGTCGCGGCGCTTTGTAGTCTATAACGGTGGCTTGGAATGTCGCCTGCTGAAATACGAACTCT
ACTAA

Upstream 100 bases:

>100_bases
TTCTATCCTACCGAATTCGGATTAGGAAAAAGGCGATCGCCCCATCCCTTACACTGGGGGATAATCTTTCCGGCAAACAA
TTTCAGGCGATAGATATAGA

Downstream 100 bases:

>100_bases
AGGGTTCTCTGTTAGGATGGGGGGCAAATTGACGCTCTTTTTTCACCTCATTTTTAAACCTTGGCATGGAGATCCTCTGC
ACTCGTCCCGGATGTCACCA

Product: N6-adenine-specific DNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MQTYFATVAQGIEELAAQELTNLGAQAVKTEYCGVSFQGDRQLLYKVNLWSRLAFRVLVQIRKVKAFTAKELYRGVQSID
WSEYLAPNQTIAVTCTGKNKNLNHTHFTALQVKNAIIDQQRDQFGDRSSVNVEDPDVLINAHIRDNRCTISLDSSGHSLH
RRGYRPAMGKAPLKENFAAGLLDLAEWTPDLPLVDPLCGSGTFVIEAALKSLNFAPGLFQGDFGFQHWQDFDAELWQTLL
NEAEYATKDQLQQPIIGQDRDQEVIQQAWTNAENCGVADHIQLACRELEQVEAPADRGVIICNPPYGHRLGADEDLGLLY
KRIGDIFKQRFKGWTGYILTGNAELAKRVGLRASRRFVVYNGGLECRLLKYELY

Sequences:

>Translated_374_residues
MQTYFATVAQGIEELAAQELTNLGAQAVKTEYCGVSFQGDRQLLYKVNLWSRLAFRVLVQIRKVKAFTAKELYRGVQSID
WSEYLAPNQTIAVTCTGKNKNLNHTHFTALQVKNAIIDQQRDQFGDRSSVNVEDPDVLINAHIRDNRCTISLDSSGHSLH
RRGYRPAMGKAPLKENFAAGLLDLAEWTPDLPLVDPLCGSGTFVIEAALKSLNFAPGLFQGDFGFQHWQDFDAELWQTLL
NEAEYATKDQLQQPIIGQDRDQEVIQQAWTNAENCGVADHIQLACRELEQVEAPADRGVIICNPPYGHRLGADEDLGLLY
KRIGDIFKQRFKGWTGYILTGNAELAKRVGLRASRRFVVYNGGLECRLLKYELY
>Mature_374_residues
MQTYFATVAQGIEELAAQELTNLGAQAVKTEYCGVSFQGDRQLLYKVNLWSRLAFRVLVQIRKVKAFTAKELYRGVQSID
WSEYLAPNQTIAVTCTGKNKNLNHTHFTALQVKNAIIDQQRDQFGDRSSVNVEDPDVLINAHIRDNRCTISLDSSGHSLH
RRGYRPAMGKAPLKENFAAGLLDLAEWTPDLPLVDPLCGSGTFVIEAALKSLNFAPGLFQGDFGFQHWQDFDAELWQTLL
NEAEYATKDQLQQPIIGQDRDQEVIQQAWTNAENCGVADHIQLACRELEQVEAPADRGVIICNPPYGHRLGADEDLGLLY
KRIGDIFKQRFKGWTGYILTGNAELAKRVGLRASRRFVVYNGGLECRLLKYELY

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=372, Percent_Identity=37.0967741935484, Blast_Score=254, Evalue=5e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR002296
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 42098; Mature: 42098

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTYFATVAQGIEELAAQELTNLGAQAVKTEYCGVSFQGDRQLLYKVNLWSRLAFRVLVQ
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEECCCCEEEEEECHHHHHHHHHHHH
IRKVKAFTAKELYRGVQSIDWSEYLAPNQTIAVTCTGKNKNLNHTHFTALQVKNAIIDQQ
HHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
RDQFGDRSSVNVEDPDVLINAHIRDNRCTISLDSSGHSLHRRGYRPAMGKAPLKENFAAG
HHHCCCCCCCCCCCCCEEEEEEEECCEEEEEECCCCCHHHHCCCCCCCCCCCCHHHHHHH
LLDLAEWTPDLPLVDPLCGSGTFVIEAALKSLNFAPGLFQGDFGFQHWQDFDAELWQTLL
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
NEAEYATKDQLQQPIIGQDRDQEVIQQAWTNAENCGVADHIQLACRELEQVEAPADRGVI
HHHHHCCHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
ICNPPYGHRLGADEDLGLLYKRIGDIFKQRFKGWTGYILTGNAELAKRVGLRASRRFVVY
EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCHHCCEEEEE
NGGLECRLLKYELY
ECCCEEEEEEEECC
>Mature Secondary Structure
MQTYFATVAQGIEELAAQELTNLGAQAVKTEYCGVSFQGDRQLLYKVNLWSRLAFRVLVQ
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEECCCCEEEEEECHHHHHHHHHHHH
IRKVKAFTAKELYRGVQSIDWSEYLAPNQTIAVTCTGKNKNLNHTHFTALQVKNAIIDQQ
HHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
RDQFGDRSSVNVEDPDVLINAHIRDNRCTISLDSSGHSLHRRGYRPAMGKAPLKENFAAG
HHHCCCCCCCCCCCCCEEEEEEEECCEEEEEECCCCCHHHHCCCCCCCCCCCCHHHHHHH
LLDLAEWTPDLPLVDPLCGSGTFVIEAALKSLNFAPGLFQGDFGFQHWQDFDAELWQTLL
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
NEAEYATKDQLQQPIIGQDRDQEVIQQAWTNAENCGVADHIQLACRELEQVEAPADRGVI
HHHHHCCHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
ICNPPYGHRLGADEDLGLLYKRIGDIFKQRFKGWTGYILTGNAELAKRVGLRASRRFVVY
EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCHHCCEEEEE
NGGLECRLLKYELY
ECCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]