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The map label for this gene is 170078236

Identifier: 170078236

GI number: 170078236

Start: 1707448

End: 1708350

Strand: Reverse

Name: 170078236

Synonym: SYNPCC7002_A1628

Alternate gene names: NA

Gene position: 1708350-1707448 (Counterclockwise)

Preceding gene: 170078238

Following gene: 170078233

Centisome position: 56.79

GC content: 54.15

Gene sequence:

>903_bases
ATGGGGTTTCCGGTTGTTTATCATCCTGATTATGTGACGCCGATTCCGGAGGAGCATCGTTTCCCGATGCCGAAGTTCCG
ATTATTGCATGGGTTGCTGTTGGAGGATGGGGTGATTCAACCGGAGCAAGTTTACCAACCGCAATTGCCAGATCGAGCCT
GGCTAGAACTTGTCCATGAGCCGGACTATGTGACGGCCTATTGCCAGGGAACCTTGACCCCAAAGGCCCAACGGCGCATT
GGTTTGCCCTGGAGTGCGGGGGTCGTCCAACGGACTTTGACGGCGGTGGGAGGAACGATTTTGACGGCACAGTTGGCCCT
AGAGCATGGGTTGGCCTGTAATACGGCGGGGGGAACACACCATGCTTTTCCGGGCTATGGGTCAGGATTTTGTATTTTGA
ATGATTTGGCGATCGCCACCCGGACAATTCAGCAACGGGGCTTGGCGCAGCGGATTTTAATCGTTGATCTCGATGTGCAT
CAGGGGGACGGCACGGCGTTTATTTTCCAAGATGACCCGACGGTATTTACCTTTTCGATGCACTGCGAGGTGAATTTTCC
CAGCCAAAAGCAGCGCAGTGATTTAGACCTCGGCCTACCGGAAGGATTGGACGACGATGGCTACCTGCAAATTTTGGCGC
ACCATCTAGAAGATCTTTTGAGTCAGGTGAAGCCGGATTTGGTGTTTTACGATGCGGGGGTGGACACCCATGTGGGCGAT
CGCCTCGGCAAATTAGCGATGACGAACACGGGTCTGTATCGACGGGAGCGGCTGGTGCTGAGTACCTGCTTGGCGGCGGG
TTATCCCGTGGCCTGTGTGATTGGTGGGGGCTATGCAAAAAATATCCATGACCTTGTATATCGCCATTCCCTGCTCCATC
GGGCAGCGCGGGATGTTTATTAA

Upstream 100 bases:

>100_bases
TTGAGGGTCTTGGGCAGGGAAAAGTTAATCCTACGACTCTTACTGCAAAAATTCTTTACAATCCTGGGAGGATAAGTTGC
TGATTTGGGGGGGGCATTGT

Downstream 100 bases:

>100_bases
ACGGCCAAAAATTCCTGGATTACAGCCTGGCTGAGTTCATGGGTACTCCCAGAAGCAACAATGCCCCCTTTCTGCATTGC
GTAGTAACGGTCAGCTTGGC

Product: histone deacetylase/AcuC/AphA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MGFPVVYHPDYVTPIPEEHRFPMPKFRLLHGLLLEDGVIQPEQVYQPQLPDRAWLELVHEPDYVTAYCQGTLTPKAQRRI
GLPWSAGVVQRTLTAVGGTILTAQLALEHGLACNTAGGTHHAFPGYGSGFCILNDLAIATRTIQQRGLAQRILIVDLDVH
QGDGTAFIFQDDPTVFTFSMHCEVNFPSQKQRSDLDLGLPEGLDDDGYLQILAHHLEDLLSQVKPDLVFYDAGVDTHVGD
RLGKLAMTNTGLYRRERLVLSTCLAAGYPVACVIGGGYAKNIHDLVYRHSLLHRAARDVY

Sequences:

>Translated_300_residues
MGFPVVYHPDYVTPIPEEHRFPMPKFRLLHGLLLEDGVIQPEQVYQPQLPDRAWLELVHEPDYVTAYCQGTLTPKAQRRI
GLPWSAGVVQRTLTAVGGTILTAQLALEHGLACNTAGGTHHAFPGYGSGFCILNDLAIATRTIQQRGLAQRILIVDLDVH
QGDGTAFIFQDDPTVFTFSMHCEVNFPSQKQRSDLDLGLPEGLDDDGYLQILAHHLEDLLSQVKPDLVFYDAGVDTHVGD
RLGKLAMTNTGLYRRERLVLSTCLAAGYPVACVIGGGYAKNIHDLVYRHSLLHRAARDVY
>Mature_299_residues
GFPVVYHPDYVTPIPEEHRFPMPKFRLLHGLLLEDGVIQPEQVYQPQLPDRAWLELVHEPDYVTAYCQGTLTPKAQRRIG
LPWSAGVVQRTLTAVGGTILTAQLALEHGLACNTAGGTHHAFPGYGSGFCILNDLAIATRTIQQRGLAQRILIVDLDVHQ
GDGTAFIFQDDPTVFTFSMHCEVNFPSQKQRSDLDLGLPEGLDDDGYLQILAHHLEDLLSQVKPDLVFYDAGVDTHVGDR
LGKLAMTNTGLYRRERLVLSTCLAAGYPVACVIGGGYAKNIHDLVYRHSLLHRAARDVY

Specific function: Putative deacetylase

COG id: COG0123

COG function: function code BQ; Deacetylases, including yeast histone deacetylase and acetoin utilization protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the histone deacetylase family

Homologues:

Organism=Homo sapiens, GI217272877, Length=301, Percent_Identity=30.2325581395349, Blast_Score=127, Evalue=1e-29,
Organism=Homo sapiens, GI209862883, Length=273, Percent_Identity=29.3040293040293, Blast_Score=122, Evalue=5e-28,
Organism=Homo sapiens, GI13128860, Length=277, Percent_Identity=28.158844765343, Blast_Score=98, Evalue=9e-21,
Organism=Homo sapiens, GI8923769, Length=295, Percent_Identity=27.1186440677966, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI293336691, Length=249, Percent_Identity=27.710843373494, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI20070354, Length=250, Percent_Identity=29.2, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI13128864, Length=308, Percent_Identity=26.2987012987013, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI169234807, Length=173, Percent_Identity=32.9479768786127, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI148539870, Length=173, Percent_Identity=32.9479768786127, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI262073092, Length=229, Percent_Identity=27.5109170305677, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI262073088, Length=170, Percent_Identity=30.5882352941176, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI226529806, Length=137, Percent_Identity=34.3065693430657, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI13128862, Length=283, Percent_Identity=25.4416961130742, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI30795202, Length=166, Percent_Identity=32.5301204819277, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI30795204, Length=166, Percent_Identity=32.5301204819277, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI17158039, Length=166, Percent_Identity=32.5301204819277, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI153085395, Length=150, Percent_Identity=32, Blast_Score=67, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI193207430, Length=300, Percent_Identity=30.6666666666667, Blast_Score=126, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI17508561, Length=283, Percent_Identity=27.5618374558304, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17537347, Length=210, Percent_Identity=31.9047619047619, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI193206283, Length=198, Percent_Identity=31.8181818181818, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17540332, Length=198, Percent_Identity=31.8181818181818, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17540334, Length=198, Percent_Identity=31.8181818181818, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17534739, Length=262, Percent_Identity=28.6259541984733, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17561978, Length=277, Percent_Identity=25.6317689530686, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193209491, Length=246, Percent_Identity=26.8292682926829, Blast_Score=71, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6323999, Length=278, Percent_Identity=25.5395683453237, Blast_Score=86, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6321244, Length=289, Percent_Identity=25.9515570934256, Blast_Score=82, Evalue=8e-17,
Organism=Saccharomyces cerevisiae, GI6325325, Length=184, Percent_Identity=30.9782608695652, Blast_Score=80, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24649807, Length=307, Percent_Identity=29.9674267100977, Blast_Score=125, Evalue=4e-29,
Organism=Drosophila melanogaster, GI24657891, Length=277, Percent_Identity=28.158844765343, Blast_Score=91, Evalue=9e-19,
Organism=Drosophila melanogaster, GI24644244, Length=289, Percent_Identity=26.643598615917, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI281360899, Length=219, Percent_Identity=29.2237442922374, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24642146, Length=215, Percent_Identity=29.7674418604651, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24642144, Length=215, Percent_Identity=29.7674418604651, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24642142, Length=215, Percent_Identity=29.7674418604651, Blast_Score=77, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1628_SYNP2 (P28606)

Other databases:

- EMBL:   Z13965
- EMBL:   CP000951
- RefSeq:   YP_001734874.1
- ProteinModelPortal:   P28606
- SMR:   P28606
- GeneID:   6055453
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A1628
- HOGENOM:   HBG290975
- OMA:   CHLAGGT
- ProtClustDB:   CLSK516799
- InterPro:   IPR000286
- Gene3D:   G3DSA:3.40.800.20
- PANTHER:   PTHR10625
- PRINTS:   PR01270

Pfam domain/function: PF00850 Hist_deacetyl

EC number: NA

Molecular weight: Translated: 33219; Mature: 33088

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFPVVYHPDYVTPIPEEHRFPMPKFRLLHGLLLEDGVIQPEQVYQPQLPDRAWLELVHE
CCCCEEECCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHCC
PDYVTAYCQGTLTPKAQRRIGLPWSAGVVQRTLTAVGGTILTAQLALEHGLACNTAGGTH
CCEEEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCEECCCCCCC
HAFPGYGSGFCILNDLAIATRTIQQRGLAQRILIVDLDVHQGDGTAFIFQDDPTVFTFSM
CCCCCCCCCEEEEHHHHHHHHHHHHCCHHEEEEEEEEEEECCCCEEEEEECCCCEEEEEE
HCEVNFPSQKQRSDLDLGLPEGLDDDGYLQILAHHLEDLLSQVKPDLVFYDAGVDTHVGD
EEEECCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH
RLGKLAMTNTGLYRRERLVLSTCLAAGYPVACVIGGGYAKNIHDLVYRHSLLHRAARDVY
HHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GFPVVYHPDYVTPIPEEHRFPMPKFRLLHGLLLEDGVIQPEQVYQPQLPDRAWLELVHE
CCCEEECCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHCC
PDYVTAYCQGTLTPKAQRRIGLPWSAGVVQRTLTAVGGTILTAQLALEHGLACNTAGGTH
CCEEEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCEECCCCCCC
HAFPGYGSGFCILNDLAIATRTIQQRGLAQRILIVDLDVHQGDGTAFIFQDDPTVFTFSM
CCCCCCCCCEEEEHHHHHHHHHHHHCCHHEEEEEEEEEEECCCCEEEEEECCCCEEEEEE
HCEVNFPSQKQRSDLDLGLPEGLDDDGYLQILAHHLEDLLSQVKPDLVFYDAGVDTHVGD
EEEECCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH
RLGKLAMTNTGLYRRERLVLSTCLAAGYPVACVIGGGYAKNIHDLVYRHSLLHRAARDVY
HHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7678591