| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
Click here to switch to the map view.
The map label for this gene is 170078220
Identifier: 170078220
GI number: 170078220
Start: 1692948
End: 1693367
Strand: Direct
Name: 170078220
Synonym: SYNPCC7002_A1612
Alternate gene names: NA
Gene position: 1692948-1693367 (Clockwise)
Preceding gene: 170078219
Following gene: 170078221
Centisome position: 56.28
GC content: 52.14
Gene sequence:
>420_bases TTGGCCCAATTGAAGCAGGGAGAACTTTTGATGGTAAACCCCCGCCGTAAAAATGGACTGATTTTGCGCAAAGCCTACCA CGGCGATTTTGCTGGCCCAGGGGCGATCATTGGTGGCGTTTTTGATCAAGATGTAGAATCGGTAATCCCCGTGGGTGCCC TGTCCCTGTTGGTGCCAGCGCCCGGTACTGAGCGGGAAAAAGCCTACCTCATTCGGCGGCAGTGGGTCCGACTCCTGAAG CAAATCACCGACAAACCCGTGCCAGAACAGCGGGCCCAAATTATTTTAAATCAGTTTGAAAATTGGTTTGACCTCGACAC GGCCGCCCAACTGTCCGATGATGTCTTTGCTGAGTTGGTCGGGGTACTGCCCCAAACTATTGCTAAAGTGCGTAACCGTG TTAACCGCTCAGAAATTTGA
Upstream 100 bases:
>100_bases TCACCGCCGCTGATGTGGCGATCGCCACCGTTCTTTATCCTTTGCCATGGGCTCTACTCCCCCCTCAACGACAAATTCTC CCATAGACCATCTTGAAATT
Downstream 100 bases:
>100_bases CGGCAAAATGTTCACCTTTAGATTGTTGTAAACCTCACCTTTAGGGGATGATAGAAACCAGTCACCAAGAGGAGAACAGT TGCTATGGGGGAGAGCATCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 139; Mature: 138
Protein sequence:
>139_residues MAQLKQGELLMVNPRRKNGLILRKAYHGDFAGPGAIIGGVFDQDVESVIPVGALSLLVPAPGTEREKAYLIRRQWVRLLK QITDKPVPEQRAQIILNQFENWFDLDTAAQLSDDVFAELVGVLPQTIAKVRNRVNRSEI
Sequences:
>Translated_139_residues MAQLKQGELLMVNPRRKNGLILRKAYHGDFAGPGAIIGGVFDQDVESVIPVGALSLLVPAPGTEREKAYLIRRQWVRLLK QITDKPVPEQRAQIILNQFENWFDLDTAAQLSDDVFAELVGVLPQTIAKVRNRVNRSEI >Mature_138_residues AQLKQGELLMVNPRRKNGLILRKAYHGDFAGPGAIIGGVFDQDVESVIPVGALSLLVPAPGTEREKAYLIRRQWVRLLKQ ITDKPVPEQRAQIILNQFENWFDLDTAAQLSDDVFAELVGVLPQTIAKVRNRVNRSEI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15571; Mature: 15440
Theoretical pI: Translated: 9.69; Mature: 9.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQLKQGELLMVNPRRKNGLILRKAYHGDFAGPGAIIGGVFDQDVESVIPVGALSLLVPA CCCCCCCCEEEECCCCCCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHHCHHHHHHEECC PGTEREKAYLIRRQWVRLLKQITDKPVPEQRAQIILNQFENWFDLDTAAQLSDDVFAELV CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH GVLPQTIAKVRNRVNRSEI HHHHHHHHHHHHHHHCCCC >Mature Secondary Structure AQLKQGELLMVNPRRKNGLILRKAYHGDFAGPGAIIGGVFDQDVESVIPVGALSLLVPA CCCCCCCEEEECCCCCCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHHCHHHHHHEECC PGTEREKAYLIRRQWVRLLKQITDKPVPEQRAQIILNQFENWFDLDTAAQLSDDVFAELV CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH GVLPQTIAKVRNRVNRSEI HHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA