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The map label for this gene is glcF [H]

Identifier: 170078192

GI number: 170078192

Start: 1664823

End: 1666148

Strand: Direct

Name: glcF [H]

Synonym: SYNPCC7002_A1583

Alternate gene names: 170078192

Gene position: 1664823-1666148 (Clockwise)

Preceding gene: 170078191

Following gene: 170078193

Centisome position: 55.35

GC content: 52.11

Gene sequence:

>1326_bases
ATGACCCTTTCTGACACAAAATTAGGTGGTTTTGACCCGCAGCTTCCCCCAGAACAGGGAGTGATCGACAGTTGCGTGCA
TTGTGGCTTTTGTTTGGATACCTGTCCGAGCTATCGGGTGCTCGGCTCGGAGATGGATTCTCCCCGGGGCCGTATTTACC
TGATGGATGCGATCGCCAAAGGGGAGGCAGAAATTAACAGCGCGACGGTGCAACATTTCGATAGTTGCCTAGGGTGTTTG
GCCTGTACTTCGGCTTGTCCGTCGGGAGTCCGTTATGACGAACTGCTGGCCTCGATGCGGGCGCAAATTGAGCGCAACTA
CACCAGAAGCCTCGGCGATCGCCTGTTTCGGTGGCTGATTTTTAATTTGTTCCCCTATCCTTTGCGCCTAAAACTGCTGC
TGCCATTGTTGTGGGTTTATCAAAATTCGGGTCTGCAATGGCTCGTTCGGAAACTGGGGATTCTCAAACTAATTCCTCGA
CTGGCGGCGATGGAGTTGATTCTGCCGAAAGTTAATCTCCAGGCCAGCAAAAAAGTATTACCCACCCTGATTCCAGCCCA
GGGGGAAAAACGGTACCGTGTTGGCATGGTGCTGGGCTGTGTCCAACGGTTGTTCTTTTCTCCGGTGAATGAAGCAACGG
CGCGAGTATTGACGGCCAATGGCTGTGAAGTGGTGATTCCCCAGGGTCAGGGATGTTGTGCGGCGCTTCCGGCCCACCAA
GGACAAACGGTGCAAGCCCAAGAACTCGCCCGTCAAATGATTGATAGTTTTGCCGATCAAGACCTCGATTACATCATTAT
CAATGCCGCCGGTTGTGGCCACACCCTTAAGGAATATGGGCAAATTTTGCAAGATGACCCAGGATATGCCCAAAAAGCCC
AGGATTTTGCGGCTAAAGTGCGTGATGCTCAGGAATTTCTCGCAACGGTGGGTTTAACGACCCCTTTAAATCCTTTAACA
TCCGAAGCTTTTCCTCTGGTTTATCAGGATGCTTGCCACCTGCTCCATGGCCAAAAAATTGCCGCCCAACCGCGCGATCT
ACTCCGACAAATTCCCAATATGCAGCTCCGGGAACCCGCTGAACATAATCTTTGTTGCGGCAGTGCTGGGGTATTTAACC
TCCTTCAACCGAAAATTGCCGCCGAACTGGGGGAACGGAAAGCCAGAAATTTACTAAATACTGGGGCGAAGGCGATCGCC
TCGGCGAATCCAGGCTGTAGTCTACAAATCCAAAACCAGCTCCAGCAGCAAGGACAAACCATTCCCCTGTGGCATCCGAT
GGAACTGCTCGATTTTGCCATTCGCGGCGTCCCCTTGCCCCTATAA

Upstream 100 bases:

>100_bases
ACGTTACGAATTATGTTGATTTTCCGCCTCCCTATCCTGGGAGGTTTTTTCTCGGAGCCGCAAACTTTTATAGTGATCTG
AGGCAGTTTTTGGACGAGCA

Downstream 100 bases:

>100_bases
TGATCCCGATATCTATGGTGGAGAACGTGATGGCACGGCAACGGGTTGGTTTATTGTTTGGCGGGAAATCTGGGGAGCAT
GATGTTTCCATCGTTTCAGC

Product: glycolate oxidase subunit (Fe-S) protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 440

Protein sequence:

>441_residues
MTLSDTKLGGFDPQLPPEQGVIDSCVHCGFCLDTCPSYRVLGSEMDSPRGRIYLMDAIAKGEAEINSATVQHFDSCLGCL
ACTSACPSGVRYDELLASMRAQIERNYTRSLGDRLFRWLIFNLFPYPLRLKLLLPLLWVYQNSGLQWLVRKLGILKLIPR
LAAMELILPKVNLQASKKVLPTLIPAQGEKRYRVGMVLGCVQRLFFSPVNEATARVLTANGCEVVIPQGQGCCAALPAHQ
GQTVQAQELARQMIDSFADQDLDYIIINAAGCGHTLKEYGQILQDDPGYAQKAQDFAAKVRDAQEFLATVGLTTPLNPLT
SEAFPLVYQDACHLLHGQKIAAQPRDLLRQIPNMQLREPAEHNLCCGSAGVFNLLQPKIAAELGERKARNLLNTGAKAIA
SANPGCSLQIQNQLQQQGQTIPLWHPMELLDFAIRGVPLPL

Sequences:

>Translated_441_residues
MTLSDTKLGGFDPQLPPEQGVIDSCVHCGFCLDTCPSYRVLGSEMDSPRGRIYLMDAIAKGEAEINSATVQHFDSCLGCL
ACTSACPSGVRYDELLASMRAQIERNYTRSLGDRLFRWLIFNLFPYPLRLKLLLPLLWVYQNSGLQWLVRKLGILKLIPR
LAAMELILPKVNLQASKKVLPTLIPAQGEKRYRVGMVLGCVQRLFFSPVNEATARVLTANGCEVVIPQGQGCCAALPAHQ
GQTVQAQELARQMIDSFADQDLDYIIINAAGCGHTLKEYGQILQDDPGYAQKAQDFAAKVRDAQEFLATVGLTTPLNPLT
SEAFPLVYQDACHLLHGQKIAAQPRDLLRQIPNMQLREPAEHNLCCGSAGVFNLLQPKIAAELGERKARNLLNTGAKAIA
SANPGCSLQIQNQLQQQGQTIPLWHPMELLDFAIRGVPLPL
>Mature_440_residues
TLSDTKLGGFDPQLPPEQGVIDSCVHCGFCLDTCPSYRVLGSEMDSPRGRIYLMDAIAKGEAEINSATVQHFDSCLGCLA
CTSACPSGVRYDELLASMRAQIERNYTRSLGDRLFRWLIFNLFPYPLRLKLLLPLLWVYQNSGLQWLVRKLGILKLIPRL
AAMELILPKVNLQASKKVLPTLIPAQGEKRYRVGMVLGCVQRLFFSPVNEATARVLTANGCEVVIPQGQGCCAALPAHQG
QTVQAQELARQMIDSFADQDLDYIIINAAGCGHTLKEYGQILQDDPGYAQKAQDFAAKVRDAQEFLATVGLTTPLNPLTS
EAFPLVYQDACHLLHGQKIAAQPRDLLRQIPNMQLREPAEHNLCCGSAGVFNLLQPKIAAELGERKARNLLNTGAKAIAS
ANPGCSLQIQNQLQQQGQTIPLWHPMELLDFAIRGVPLPL

Specific function: Unknown

COG id: COG0247

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI48994913, Length=420, Percent_Identity=32.6190476190476, Blast_Score=193, Evalue=2e-50,
Organism=Escherichia coli, GI1786497, Length=238, Percent_Identity=27.7310924369748, Blast_Score=107, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR004017
- InterPro:   IPR012285
- InterPro:   IPR012257 [H]

Pfam domain/function: PF02754 CCG [H]

EC number: NA

Molecular weight: Translated: 48499; Mature: 48368

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLSDTKLGGFDPQLPPEQGVIDSCVHCGFCLDTCPSYRVLGSEMDSPRGRIYLMDAIAK
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCEEEEEEEHHC
GEAEINSATVQHFDSCLGCLACTSACPSGVRYDELLASMRAQIERNYTRSLGDRLFRWLI
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FNLFPYPLRLKLLLPLLWVYQNSGLQWLVRKLGILKLIPRLAAMELILPKVNLQASKKVL
HHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
PTLIPAQGEKRYRVGMVLGCVQRLFFSPVNEATARVLTANGCEVVIPQGQGCCAALPAHQ
HHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHEEECCCCEEEEECCCCCEEECCCCC
GQTVQAQELARQMIDSFADQDLDYIIINAAGCGHTLKEYGQILQDDPGYAQKAQDFAAKV
CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH
RDAQEFLATVGLTTPLNPLTSEAFPLVYQDACHLLHGQKIAAQPRDLLRQIPNMQLREPA
HHHHHHHHHHCCCCCCCCCHHHHCCHHHHHHHHHHCCCHHHCCHHHHHHHCCCCCCCCCC
EHNLCCGSAGVFNLLQPKIAAELGERKARNLLNTGAKAIASANPGCSLQIQNQLQQQGQT
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHCCCC
IPLWHPMELLDFAIRGVPLPL
CCCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TLSDTKLGGFDPQLPPEQGVIDSCVHCGFCLDTCPSYRVLGSEMDSPRGRIYLMDAIAK
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCEEEEEEEHHC
GEAEINSATVQHFDSCLGCLACTSACPSGVRYDELLASMRAQIERNYTRSLGDRLFRWLI
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FNLFPYPLRLKLLLPLLWVYQNSGLQWLVRKLGILKLIPRLAAMELILPKVNLQASKKVL
HHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
PTLIPAQGEKRYRVGMVLGCVQRLFFSPVNEATARVLTANGCEVVIPQGQGCCAALPAHQ
HHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHEEECCCCEEEEECCCCCEEECCCCC
GQTVQAQELARQMIDSFADQDLDYIIINAAGCGHTLKEYGQILQDDPGYAQKAQDFAAKV
CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH
RDAQEFLATVGLTTPLNPLTSEAFPLVYQDACHLLHGQKIAAQPRDLLRQIPNMQLREPA
HHHHHHHHHHCCCCCCCCCHHHHCCHHHHHHHHHHCCCHHHCCHHHHHHHCCCCCCCCCC
EHNLCCGSAGVFNLLQPKIAAELGERKARNLLNTGAKAIASANPGCSLQIQNQLQQQGQT
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHCCCC
IPLWHPMELLDFAIRGVPLPL
CCCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]