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The map label for this gene is psbC [H]

Identifier: 170078168

GI number: 170078168

Start: 1645160

End: 1646569

Strand: Reverse

Name: psbC [H]

Synonym: SYNPCC7002_A1559

Alternate gene names: 170078168

Gene position: 1646569-1645160 (Counterclockwise)

Preceding gene: 170078169

Following gene: 170078160

Centisome position: 54.74

GC content: 51.63

Gene sequence:

>1410_bases
TTGTATTCCCTGAGGAGGTATTACCCCGTGGTAACGCTCTCTAATGCGCCCATTTCCGGTGGTCGTGATATCGAATCGAC
CGGCTTTGCGTGGTGGGCTGGTAATGCCCGCCTGATCAATCTCTCCGGTAAGCTCTTGGGTGCCCACGTTGCCCATGCTG
GCCTTATCGTATTCTGGACTGGTGCGATGACTTTATTTGAAGTCGCTCACTTTGTCGCAGAGAAGCCCATGCACGAGCAG
GGTTTCATCCTGATGCCTCACCTCGCAACCCTTGGTTGGGGTGTCGGCCCTGGTGGTGAAGTTATTGATACTTTCCCCTA
CTTTGTCGTTGGTGTATTACACCTGATCTCTTCTGCGGTTCTCGGTCTGGGTGGTATCTACCATGCTGTCCGTGGCCCTG
AAACCCTCGAAGAATATTCCAGCTTCTTTGGTTATGACTGGAAAGACAAGAACCAAATGACCAACATCATTGGTTATCAC
CTCATCCTCCTGGGTTGTGGTGCGCTGTTGCTTGTCTTTAAAGCGATGTTCTTTGGTGGTGTGTACGACACCTGGGCCCC
TGGTGGTGGCGACGTGCGTATCATCAGTAATCCAACTTTGAACCCGGCAGTAATCTTTGGTTATCTGTTCAAAGCACCCT
TCGGTGGCGAAGGCTGGATGATCGGTGTCAACAACATGGAAGATATTATCGGTGGCCACATCTATGTGGGTCTGATTTGT
ATCTTTGGTGGTATCTGGCACATTCTCACCAAACCTTTCGGTTGGGCCCGTCGTGCGCTCGTTTGGTCTGGTGAAGCTTA
TCTTTCCTACAGTCTCGGTGCGCTGTCTTTGATGGCCTTCATCGCGACTTGCTTTGTGTGGTTCAACAATACTGCTTACC
CCAGTGAATTTTATGGCCCGACTAACGCTGAAGCGTCCCAGTCCCAGGCTTTGATCTTCTTGGCTCGTGACCAATCTATG
GGTGCGAACGTTGGTTCTGCCCAAGGTCCCACTGGTCTTGGTAAGTACTTGATGCGTTCTCCTACCGGTGAAATTATCCT
CGGTGGTGAAACCATGCGCTTCTGGGATTTCCGTGGTCCTTGGTTGGAGCCCCTCCGTGGCCCCAATGGTCTTGACCTCG
ACAAAATCCGCAATGACATTCAGCCTTGGCAGCTTCGTCGTGCGGCTGAATACATGACCCACGCCCCTAATGCTTCCATT
AACTCTGTTGGTGGGATTATTACGGAGCCTAACTCCTTCAACTTTGTGAACCTTCGTCAGTGGTTGGCTGGTTCTCACTT
TGTTCTTTCCTTCTTCTTCCTCGTTGGTCACCTGTGGCATGCTGGTCGTGCACGGGCGGCTGAGGCTGGTTTCGAGAAAG
GGATTGACCGTGAGACTGAGCCCGTACTGAACATGAACGAACTCGACTAA

Upstream 100 bases:

>100_bases
GCGGAAGACCCCGAATTTGAAACGTTCTACACGAAGAATATTCTGTTGAACGAAGGTATGCGTGCATGGATGGCACCGCA
AGACCAAATTCACGAACAAT

Downstream 100 bases:

>100_bases
GAATCTGTTGAGGCGTCAGTTTAGTTACTGAGTTTCATGAATAAAAACTCCTGCCCTAGGGTAGGAGTTTTTTGCTTGGG
GCATACCAGCTTTAGAAGAA

Product: photosystem II 44 kDa subunit reaction center protein

Products: NA

Alternate protein names: PSII 43 kDa protein; Protein CP-43; Protein P6 [H]

Number of amino acids: Translated: 469; Mature: 469

Protein sequence:

>469_residues
MYSLRRYYPVVTLSNAPISGGRDIESTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWTGAMTLFEVAHFVAEKPMHEQ
GFILMPHLATLGWGVGPGGEVIDTFPYFVVGVLHLISSAVLGLGGIYHAVRGPETLEEYSSFFGYDWKDKNQMTNIIGYH
LILLGCGALLLVFKAMFFGGVYDTWAPGGGDVRIISNPTLNPAVIFGYLFKAPFGGEGWMIGVNNMEDIIGGHIYVGLIC
IFGGIWHILTKPFGWARRALVWSGEAYLSYSLGALSLMAFIATCFVWFNNTAYPSEFYGPTNAEASQSQALIFLARDQSM
GANVGSAQGPTGLGKYLMRSPTGEIILGGETMRFWDFRGPWLEPLRGPNGLDLDKIRNDIQPWQLRRAAEYMTHAPNASI
NSVGGIITEPNSFNFVNLRQWLAGSHFVLSFFFLVGHLWHAGRARAAEAGFEKGIDRETEPVLNMNELD

Sequences:

>Translated_469_residues
MYSLRRYYPVVTLSNAPISGGRDIESTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWTGAMTLFEVAHFVAEKPMHEQ
GFILMPHLATLGWGVGPGGEVIDTFPYFVVGVLHLISSAVLGLGGIYHAVRGPETLEEYSSFFGYDWKDKNQMTNIIGYH
LILLGCGALLLVFKAMFFGGVYDTWAPGGGDVRIISNPTLNPAVIFGYLFKAPFGGEGWMIGVNNMEDIIGGHIYVGLIC
IFGGIWHILTKPFGWARRALVWSGEAYLSYSLGALSLMAFIATCFVWFNNTAYPSEFYGPTNAEASQSQALIFLARDQSM
GANVGSAQGPTGLGKYLMRSPTGEIILGGETMRFWDFRGPWLEPLRGPNGLDLDKIRNDIQPWQLRRAAEYMTHAPNASI
NSVGGIITEPNSFNFVNLRQWLAGSHFVLSFFFLVGHLWHAGRARAAEAGFEKGIDRETEPVLNMNELD
>Mature_469_residues
MYSLRRYYPVVTLSNAPISGGRDIESTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWTGAMTLFEVAHFVAEKPMHEQ
GFILMPHLATLGWGVGPGGEVIDTFPYFVVGVLHLISSAVLGLGGIYHAVRGPETLEEYSSFFGYDWKDKNQMTNIIGYH
LILLGCGALLLVFKAMFFGGVYDTWAPGGGDVRIISNPTLNPAVIFGYLFKAPFGGEGWMIGVNNMEDIIGGHIYVGLIC
IFGGIWHILTKPFGWARRALVWSGEAYLSYSLGALSLMAFIATCFVWFNNTAYPSEFYGPTNAEASQSQALIFLARDQSM
GANVGSAQGPTGLGKYLMRSPTGEIILGGETMRFWDFRGPWLEPLRGPNGLDLDKIRNDIQPWQLRRAAEYMTHAPNASI
NSVGGIITEPNSFNFVNLRQWLAGSHFVLSFFFLVGHLWHAGRARAAEAGFEKGIDRETEPVLNMNELD

Specific function: The 43 kDa protein (p6) is a component of the core of photosystem II. It is a chlorophyll binding protein [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. PsbC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932
- InterPro:   IPR005869 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 51550; Mature: 51550

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSLRRYYPVVTLSNAPISGGRDIESTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWT
CCCCCCCCCEEEECCCCCCCCCCCCCCCEEEECCCEEEEEECCHHHHHHHHHCCEEEEHH
GAMTLFEVAHFVAEKPMHEQGFILMPHLATLGWGVGPGGEVIDTFPYFVVGVLHLISSAV
HHHHHHHHHHHHHHCCCCCCCCEECCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LGLGGIYHAVRGPETLEEYSSFFGYDWKDKNQMTNIIGYHLILLGCGALLLVFKAMFFGG
HHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VYDTWAPGGGDVRIISNPTLNPAVIFGYLFKAPFGGEGWMIGVNNMEDIIGGHIYVGLIC
CCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCHHHHHCHHHHHHHHH
IFGGIWHILTKPFGWARRALVWSGEAYLSYSLGALSLMAFIATCFVWFNNTAYPSEFYGP
HHHHHHHHHHCCCCHHHHEEEECCCHHEEHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCC
TNAEASQSQALIFLARDQSMGANVGSAQGPTGLGKYLMRSPTGEIILGGETMRFWDFRGP
CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCEEECCCEEEEEECCCC
WLEPLRGPNGLDLDKIRNDIQPWQLRRAAEYMTHAPNASINSVGGIITEPNSFNFVNLRQ
CHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCEEHHHH
WLAGSHFVLSFFFLVGHLWHAGRARAAEAGFEKGIDRETEPVLNMNELD
HHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MYSLRRYYPVVTLSNAPISGGRDIESTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWT
CCCCCCCCCEEEECCCCCCCCCCCCCCCEEEECCCEEEEEECCHHHHHHHHHCCEEEEHH
GAMTLFEVAHFVAEKPMHEQGFILMPHLATLGWGVGPGGEVIDTFPYFVVGVLHLISSAV
HHHHHHHHHHHHHHCCCCCCCCEECCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LGLGGIYHAVRGPETLEEYSSFFGYDWKDKNQMTNIIGYHLILLGCGALLLVFKAMFFGG
HHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VYDTWAPGGGDVRIISNPTLNPAVIFGYLFKAPFGGEGWMIGVNNMEDIIGGHIYVGLIC
CCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCHHHHHCHHHHHHHHH
IFGGIWHILTKPFGWARRALVWSGEAYLSYSLGALSLMAFIATCFVWFNNTAYPSEFYGP
HHHHHHHHHHCCCCHHHHEEEECCCHHEEHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCC
TNAEASQSQALIFLARDQSMGANVGSAQGPTGLGKYLMRSPTGEIILGGETMRFWDFRGP
CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCEEECCCEEEEEECCCC
WLEPLRGPNGLDLDKIRNDIQPWQLRRAAEYMTHAPNASINSVGGIITEPNSFNFVNLRQ
CHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCEEHHHH
WLAGSHFVLSFFFLVGHLWHAGRARAAEAGFEKGIDRETEPVLNMNELD
HHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231; 3130247 [H]