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The map label for this gene is appC [H]

Identifier: 170078132

GI number: 170078132

Start: 1608115

End: 1608990

Strand: Direct

Name: appC [H]

Synonym: SYNPCC7002_A1523

Alternate gene names: 170078132

Gene position: 1608115-1608990 (Clockwise)

Preceding gene: 170078131

Following gene: 170078133

Centisome position: 53.46

GC content: 55.02

Gene sequence:

>876_bases
ATGTGGAATAAGACGCGCAGTTGGCAACGGTTTTACCGCAATCGTTTGGCGGTACTTGGGGGGATTGTCCTGGGGGCGAT
CGCCTTGTTGGTTTTTGGCCTACCGCTGATTTACCAGACCCCCATCGATGGCATTGACTTCGCCAGAAGTGCTCTTGCAC
CAAGCTGGGAACACCCTTTTGGCACCGATGACCTCGGACAGGATCAATTGGCGCGGGTGTTGTTTGGGGGGAAGGTTTCC
CTGACTGTCGGGCTGGCTGCGATGGCTGTGGCGATTAGTTTAGGGACTGTGATTGGGGCGATCGCCGGCTTTTATGGTGG
CTGGCTCGATCAATTGTTGATGCGTTTGACGGATCTATTTTTGTCCCTCCCCCAACTGCCAGTATTACTCCTGGTAGTCT
ATCTGTTTCGGGAATCCCTCCGGGCGATCGCCGGGGCAGAATGGGGCACCTTTCTCCTCGTGGTGCTGGTGAGCGGTAGC
TTGAATTGGATGGCGATCGCCCGGTTAGTCCGCGCCCAATGTTTAACCCTCAAAAACCGAGAATTTGTGACCGCTGCCCA
GGCCATGGGGGCCAATCCCCTCCGCACCCTCAGGACACATCTTTTGCCGAATCTGGTCAGTCTCATTGCCGTCGCCGCTA
CCCTGTCCGTGAGTAACGCGATTATCACCGAATCAACCCTCAGTTTCCTTGGTTTAGGGTTTCCGCCGGATATTCCGACT
TGGGGGCGGATGCTGTATGATGCCCAAAATTTCGTGACCACAGCTCCCCACATGGCGCTATTTCCAGGCTTAGCGATTTT
TTTGACGGTGCTCAGTTTAAATTACCTTGGCGATGGCCTCCGAGACGCCTTTGATCCGAAAAGCGCGTCCCACTAA

Upstream 100 bases:

>100_bases
GTATCGGTCGCCGCCAATCAGCCGGAACCCCTCCAACTGAAAAAATTTAAGGCGTCTGGGTTCACGTCCCGGGTGCGTCC
TTTCTATTACGATAACGAGG

Downstream 100 bases:

>100_bases
GCTAGAATAAACGACCCCGATTTCAGGGTGTGATCGAGCATTAATTCAGCCATGGCGAAGAAACAAAAACAACGCTTTCC
CCATCTCCTTGGGTCTAAAT

Product: permease protein of ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MWNKTRSWQRFYRNRLAVLGGIVLGAIALLVFGLPLIYQTPIDGIDFARSALAPSWEHPFGTDDLGQDQLARVLFGGKVS
LTVGLAAMAVAISLGTVIGAIAGFYGGWLDQLLMRLTDLFLSLPQLPVLLLVVYLFRESLRAIAGAEWGTFLLVVLVSGS
LNWMAIARLVRAQCLTLKNREFVTAAQAMGANPLRTLRTHLLPNLVSLIAVAATLSVSNAIITESTLSFLGLGFPPDIPT
WGRMLYDAQNFVTTAPHMALFPGLAIFLTVLSLNYLGDGLRDAFDPKSASH

Sequences:

>Translated_291_residues
MWNKTRSWQRFYRNRLAVLGGIVLGAIALLVFGLPLIYQTPIDGIDFARSALAPSWEHPFGTDDLGQDQLARVLFGGKVS
LTVGLAAMAVAISLGTVIGAIAGFYGGWLDQLLMRLTDLFLSLPQLPVLLLVVYLFRESLRAIAGAEWGTFLLVVLVSGS
LNWMAIARLVRAQCLTLKNREFVTAAQAMGANPLRTLRTHLLPNLVSLIAVAATLSVSNAIITESTLSFLGLGFPPDIPT
WGRMLYDAQNFVTTAPHMALFPGLAIFLTVLSLNYLGDGLRDAFDPKSASH
>Mature_291_residues
MWNKTRSWQRFYRNRLAVLGGIVLGAIALLVFGLPLIYQTPIDGIDFARSALAPSWEHPFGTDDLGQDQLARVLFGGKVS
LTVGLAAMAVAISLGTVIGAIAGFYGGWLDQLLMRLTDLFLSLPQLPVLLLVVYLFRESLRAIAGAEWGTFLLVVLVSGS
LNWMAIARLVRAQCLTLKNREFVTAAQAMGANPLRTLRTHLLPNLVSLIAVAATLSVSNAIITESTLSFLGLGFPPDIPT
WGRMLYDAQNFVTTAPHMALFPGLAIFLTVLSLNYLGDGLRDAFDPKSASH

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=283, Percent_Identity=39.2226148409894, Blast_Score=194, Evalue=6e-51,
Organism=Escherichia coli, GI1787498, Length=289, Percent_Identity=39.4463667820069, Blast_Score=172, Evalue=3e-44,
Organism=Escherichia coli, GI1789964, Length=291, Percent_Identity=36.7697594501718, Blast_Score=147, Evalue=7e-37,
Organism=Escherichia coli, GI1787760, Length=260, Percent_Identity=33.0769230769231, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1789889, Length=250, Percent_Identity=34.8, Blast_Score=138, Evalue=5e-34,
Organism=Escherichia coli, GI1788505, Length=241, Percent_Identity=30.7053941908714, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787549, Length=286, Percent_Identity=31.1188811188811, Blast_Score=103, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31540; Mature: 31540

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]