| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170077950
Identifier: 170077950
GI number: 170077950
Start: 1390420
End: 1391448
Strand: Direct
Name: 170077950
Synonym: SYNPCC7002_A1335
Alternate gene names: NA
Gene position: 1390420-1391448 (Clockwise)
Preceding gene: 170077948
Following gene: 170077951
Centisome position: 46.22
GC content: 53.35
Gene sequence:
>1029_bases TTGACCGACATTTCAACGGCAGACCTTGCCGCCGCCTTGACCACTGACGTTGACTTTAACTTGGAGCTGCCCGATCCAGA GGACGATCAACTCCACGACGCGGAATTTGATACCCAGATCGAGCGGGTCTGGCAAATTTGCGATCGTTTTGACCTGCAAA CGGACATTTGGCGGGGCCGGATTATGCGGGCCGTGCGAGATCGAGAAAAACGTGGCGGCGACGGGCGCGGAACAGGCTTT TTAAACTGGCTCAAACAACGGGAAATTAGCAAGAGTCAAGCCTACGGCCTCATCGAACTAGCCAACAGTGCTGATACTCT CCTCGCCGAAGGGCAACTAGACCCCAACAGCATTAATAATTTCAGTAAAAATGCTTTCGTCGAAACGGCGAAATCGGCCC CCGAAATTCAAAAACTCGTCGCCGATGCCGCCCAAAAAGGCGATCGCATTACCAGACGGGAAGTAAAACAGTTGGCCGAC GAATGGACGAGCATGAGTTCGGAGATGCTCCCCGATGAAGTTAAAGAACAGGCCGCCAGCGGTGCCCTCCCCAGTCGGTT TCTCTCGCCCTTGGTAAAAGAATTAGAAAAGCTGCCAGAAACCCACGTCACAGCGATCCAAGAAGAAATCCGCGAAGCCC CCAACACCGATACCGTCAAAGCGATGACCCGTGAGGCGAAGAGTTTAGCGAAATATATCGATGCCGCCGCCCAGGTGCAG ACCCTCCGTAAGGCGAATATTGACCTGGAAATGGCCCTCGAAGAAGCGCTGCGTTTGGATTGTCTGGGTACTGCCGCCGA TCTGGTGAAACAGGCCACCCAGATGGAGCAATGTGTGGTGAAGCTCTTTACCACCTGGAAGCGCCTAGGAAAATTAGCCG ATCGCCTTTATGTGGATACGGGGGCGAGCAATCCCTATTTACGGTCGATGTTGGGCACCCTAGAAGCCCTGAGTAGCGAG GTTTTGGAAGTCGATTTAGATGATTCCGGCGAGAGTAGTGTGCGGATTCGCATTTTGGGAGAAGAGTAA
Upstream 100 bases:
>100_bases CTTGTCGGGTGGGAAAATTCCCTCTAAAATCAGTGGGGCTTAACGAAAGCTAAACCTTTACTCCCTGTCGTTTTTAAACG CGATCGCCTTTATGACCAGC
Downstream 100 bases:
>100_bases AATAGCGGGTAACAGTTTCAGTTAGGAGTAACGGATCCGATGGGTAGATGGTTCGGGGCGATCGCCTTGGTACTGGCTTT AGTTTTCGGTTTGGGACAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 342; Mature: 341
Protein sequence:
>342_residues MTDISTADLAAALTTDVDFNLELPDPEDDQLHDAEFDTQIERVWQICDRFDLQTDIWRGRIMRAVRDREKRGGDGRGTGF LNWLKQREISKSQAYGLIELANSADTLLAEGQLDPNSINNFSKNAFVETAKSAPEIQKLVADAAQKGDRITRREVKQLAD EWTSMSSEMLPDEVKEQAASGALPSRFLSPLVKELEKLPETHVTAIQEEIREAPNTDTVKAMTREAKSLAKYIDAAAQVQ TLRKANIDLEMALEEALRLDCLGTAADLVKQATQMEQCVVKLFTTWKRLGKLADRLYVDTGASNPYLRSMLGTLEALSSE VLEVDLDDSGESSVRIRILGEE
Sequences:
>Translated_342_residues MTDISTADLAAALTTDVDFNLELPDPEDDQLHDAEFDTQIERVWQICDRFDLQTDIWRGRIMRAVRDREKRGGDGRGTGF LNWLKQREISKSQAYGLIELANSADTLLAEGQLDPNSINNFSKNAFVETAKSAPEIQKLVADAAQKGDRITRREVKQLAD EWTSMSSEMLPDEVKEQAASGALPSRFLSPLVKELEKLPETHVTAIQEEIREAPNTDTVKAMTREAKSLAKYIDAAAQVQ TLRKANIDLEMALEEALRLDCLGTAADLVKQATQMEQCVVKLFTTWKRLGKLADRLYVDTGASNPYLRSMLGTLEALSSE VLEVDLDDSGESSVRIRILGEE >Mature_341_residues TDISTADLAAALTTDVDFNLELPDPEDDQLHDAEFDTQIERVWQICDRFDLQTDIWRGRIMRAVRDREKRGGDGRGTGFL NWLKQREISKSQAYGLIELANSADTLLAEGQLDPNSINNFSKNAFVETAKSAPEIQKLVADAAQKGDRITRREVKQLADE WTSMSSEMLPDEVKEQAASGALPSRFLSPLVKELEKLPETHVTAIQEEIREAPNTDTVKAMTREAKSLAKYIDAAAQVQT LRKANIDLEMALEEALRLDCLGTAADLVKQATQMEQCVVKLFTTWKRLGKLADRLYVDTGASNPYLRSMLGTLEALSSEV LEVDLDDSGESSVRIRILGEE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38133; Mature: 38002
Theoretical pI: Translated: 4.40; Mature: 4.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDISTADLAAALTTDVDFNLELPDPEDDQLHDAEFDTQIERVWQICDRFDLQTDIWRGR CCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH IMRAVRDREKRGGDGRGTGFLNWLKQREISKSQAYGLIELANSADTLLAEGQLDPNSINN HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHHCCCCHHHHHCCCCCCHHHHCC FSKNAFVETAKSAPEIQKLVADAAQKGDRITRREVKQLADEWTSMSSEMLPDEVKEQAAS HHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC GALPSRFLSPLVKELEKLPETHVTAIQEEIREAPNTDTVKAMTREAKSLAKYIDAAAQVQ CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH TLRKANIDLEMALEEALRLDCLGTAADLVKQATQMEQCVVKLFTTWKRLGKLADRLYVDT HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GASNPYLRSMLGTLEALSSEVLEVDLDDSGESSVRIRILGEE CCCCHHHHHHHHHHHHHHHHHEEEECCCCCCCEEEEEEECCC >Mature Secondary Structure TDISTADLAAALTTDVDFNLELPDPEDDQLHDAEFDTQIERVWQICDRFDLQTDIWRGR CCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH IMRAVRDREKRGGDGRGTGFLNWLKQREISKSQAYGLIELANSADTLLAEGQLDPNSINN HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHHCCCCHHHHHCCCCCCHHHHCC FSKNAFVETAKSAPEIQKLVADAAQKGDRITRREVKQLADEWTSMSSEMLPDEVKEQAAS HHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC GALPSRFLSPLVKELEKLPETHVTAIQEEIREAPNTDTVKAMTREAKSLAKYIDAAAQVQ CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH TLRKANIDLEMALEEALRLDCLGTAADLVKQATQMEQCVVKLFTTWKRLGKLADRLYVDT HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GASNPYLRSMLGTLEALSSEVLEVDLDDSGESSVRIRILGEE CCCCHHHHHHHHHHHHHHHHHEEEECCCCCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA