| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170077920
Identifier: 170077920
GI number: 170077920
Start: 1357771
End: 1360506
Strand: Direct
Name: 170077920
Synonym: SYNPCC7002_A1305
Alternate gene names: NA
Gene position: 1357771-1360506 (Clockwise)
Preceding gene: 170077919
Following gene: 170077921
Centisome position: 45.14
GC content: 50.4
Gene sequence:
>2736_bases ATGTCCTTAAGCGATGAATTTAAGCAAGCCCTCCGCAGCGGCGACCTTTCCAAAGCCTTTACGATGGTGGCGAGTAAGGC AGCAACCCTAAATATTACGACTCGCATTGTCCGTCATCCTGACCAGGGTGAGCCCTACCCTCCCGATACGAGCCTCCATA CCCAAGTCGATCTCATTAATGGCACCGTCGAAAATGATGTCGACGAGGCCGTACTCAATACTGCTCAGTACCAGAATCTC CAGCATTTTCATCAACAGCAAGTTGCCCTAGGTCACCGTAAAATTCAAGAAAATTTCCAGGGTTTGCAACAGCTATTTCA GTTGCTTGTGACCCTGCAGCAATATGACCGCTTGATGAATGCCGAGGAACCCCTAGACCTGAAATTCCTTGAAATTCCTA ACCAAACGCTCATGGCCGCAACGGTGAAGGTTGTTGAGCCTTTTTCGGAAACGCCGCCGGAGAGTGATAAAATTCCCCCT CTGCCCCATAATTCCCTGCCAACGGTAGCCCCCTCTGCCCCGACCGAATCAGCTGCGGAACCTCAGCCCAGCTTTGTCGC AGAAAAGAACGAGGCGAAGGATCTAGCGGATGCTGATTCTCTCAACTTTTTAGATAATTTTGCGGAAATTGCCCTGGATG AAACGCCAGAGGCGACCCTGACAACCCATGAGGCCCCAGAAATTGAAGATTGGGAAACCCCTGTTGATACCACGGCGGCA GAACGGGCCAACGGCGATCGCCCCGATGCCTATGTCCCCAATTTGGCAGATTTTGAAGTAGACAGCGATCCCTTCAGAGA TGAGGCAGTAGACGATTTAGAATTAGAAGATTTACTCGAAGACCCCGAAACTCCCGTAGCAGAGACAGCGACATCGTTAG AAACCACGGATCTAGATGCGGTCGATGATGAGACTTTATTTGCATTTTTGAATCAGGATTGGCACAATCACCCAGGCGTC ACGGAGATCACGTCCCTCGATGGGCCGGAGACAGACCGATTGCCTTTACCTCCCCTTCCGGAAAATTGGTTGGAGCAGGA ACTGGCCGCAGAAGCAGAGGCTTTACCTGATCTGGCAGAGTCCGAAGCTAATGATGGTGATAGTGAAGCAGACTTAGGGG ACTTCAATGAAACCATCGCTGACTTTGGGGAGGATATTTTCATAGAGGATCTGGCCCTCGGCGAACTCCCGGAAGATGAA CTTGGCGATCGCCTAAGCCAAGCCTTCCCGGATGTCACCACCGCCGATTTTGACAATGACCCGGAAGCCTCATCAGAGTT GACGGCAGATGATGCCTTGCCCAACGAGGAATTCAGCGAAGAAGAAGAATTAGACTTTACGGACTCTGACTTAGAACGTT TAGAGACTTTGGCCGCCGCTGACTTGGACGATCTTCTGGGGAGTAATGAAGAAACGCTCATTGAAACCACCGAAGCAGAT GCGGCGATCGCCCCCGAAGAAACCATTACAGATCACCAAGACCTACCCACGGATCTAGAGGATTTGGACGCCTTTGACTT CAACCTCTTCCCCACAGATTTAGACGAAAATACCCTCGGCCCCTTAAATGCCCCAGACCTTGGCAGTTCAGACTTAGCCC TAGATCTAGAATTAGATGACGACGGAGACCTAGACCTCGATCCCGATGCTTTTGATGCCGATTTTGAGCTTGGGGCTGAT CCCTTGGCAACAGCAGATCCCCTAGCCGAGGAAGACTTCGATCTGCCCAGTGATTTTGAGCTTGATCTCGAACCCATTGA TCATTCCAACAATACCAGTGATGATTCTGGGTCAGATATCGATTCCCTAGAAGCTCCAGAAGCTCTATCTGAAGACGATC TTGAGCAATTTGACGATTTTGAGTTTGACCTCGACCAGATGGAGCTCTCTGGGGAAATGGCCCTTGATCCCCTCGATGCA TCCTTTGATTTAGATCTAGAACAACAAGACTTCACCGAGGATATTCACGTCGCCCCGGCTGATCCTGATGCCCCACCGGA ATCCACGACGGATCCCGACGCTTGGCTGTCAGAGGGAGCCGACCCAGAGGAAGAAGATGCCGATATCTTTAACCTAGGGG AACTCGATGAGGCAGCACTGCTCGACTTTGACCTTGATCAAGACCATCTCTCCGAACTTGAAATCGAAGCCCTTGATCAC CAAGAAAATTCCCACGACTTTGAGGCCAGTGAGTTCAGCAAAGAGACTGTGATTCAGGCAGATTTTCAACAGCCAGATGA TCTTAGTCCGCAAGATGCTGCAGCCCTGGATTTTGACGACTTAGACCTTGATCTTGACCCCCAGACTTTGCCACCGGAGG CCATGGCCCTTTGGGATGATGATCTTGACCTTACAGCCGATCTCCCTTCCCTAGGAGATGAAAGCAACGGCACCAGCGAG GCCAATCATCACCATGACGCAACAGCCGCCCCGACCAATGATTTCAGCGATGATAGTTGGTTAGAGGAACTTGATCTGTC GGGTGAACTAGATCCTGATTTCGATCTTGCCCTTGATGACGAAAATTCAGCGATAGATATCACCAGCCTCGATAATTTGG ATCAAGACAGTGCCATTGATCTATCCGCCAGCGATGCGGCGATCGCCCCCGATGGGGATCTAGATTTAGAAGAAGCGCTA GCAGATTTAGAAGAACTGAGTACCTTTGATAGCAAGGACTTTGATGATTTTGATTTTGGAGACGAGGCGCCTCTTTTTCT AGAAGAAGAGTCCTAG
Upstream 100 bases:
>100_bases TTCTGAGAAGAAATAACATCCGCCCAGCCATCATCCCCAGGCTTTTATCCATACTGCGCCCCCATTTTTGCGCCAACCCA GTGACCAAGGAGATTCCACC
Downstream 100 bases:
>100_bases GTGTTACTGCTAACGACGCTCCCAATTGTTTCATCCCACTTTTTTGGTCTCCCATGAATCGTTCTGCTCCCGAAGCCAAA TCCCCTCAGCTCCAGCCTGC
Product: surface protein SdrI, putative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 911; Mature: 910
Protein sequence:
>911_residues MSLSDEFKQALRSGDLSKAFTMVASKAATLNITTRIVRHPDQGEPYPPDTSLHTQVDLINGTVENDVDEAVLNTAQYQNL QHFHQQQVALGHRKIQENFQGLQQLFQLLVTLQQYDRLMNAEEPLDLKFLEIPNQTLMAATVKVVEPFSETPPESDKIPP LPHNSLPTVAPSAPTESAAEPQPSFVAEKNEAKDLADADSLNFLDNFAEIALDETPEATLTTHEAPEIEDWETPVDTTAA ERANGDRPDAYVPNLADFEVDSDPFRDEAVDDLELEDLLEDPETPVAETATSLETTDLDAVDDETLFAFLNQDWHNHPGV TEITSLDGPETDRLPLPPLPENWLEQELAAEAEALPDLAESEANDGDSEADLGDFNETIADFGEDIFIEDLALGELPEDE LGDRLSQAFPDVTTADFDNDPEASSELTADDALPNEEFSEEEELDFTDSDLERLETLAAADLDDLLGSNEETLIETTEAD AAIAPEETITDHQDLPTDLEDLDAFDFNLFPTDLDENTLGPLNAPDLGSSDLALDLELDDDGDLDLDPDAFDADFELGAD PLATADPLAEEDFDLPSDFELDLEPIDHSNNTSDDSGSDIDSLEAPEALSEDDLEQFDDFEFDLDQMELSGEMALDPLDA SFDLDLEQQDFTEDIHVAPADPDAPPESTTDPDAWLSEGADPEEEDADIFNLGELDEAALLDFDLDQDHLSELEIEALDH QENSHDFEASEFSKETVIQADFQQPDDLSPQDAAALDFDDLDLDLDPQTLPPEAMALWDDDLDLTADLPSLGDESNGTSE ANHHHDATAAPTNDFSDDSWLEELDLSGELDPDFDLALDDENSAIDITSLDNLDQDSAIDLSASDAAIAPDGDLDLEEAL ADLEELSTFDSKDFDDFDFGDEAPLFLEEES
Sequences:
>Translated_911_residues MSLSDEFKQALRSGDLSKAFTMVASKAATLNITTRIVRHPDQGEPYPPDTSLHTQVDLINGTVENDVDEAVLNTAQYQNL QHFHQQQVALGHRKIQENFQGLQQLFQLLVTLQQYDRLMNAEEPLDLKFLEIPNQTLMAATVKVVEPFSETPPESDKIPP LPHNSLPTVAPSAPTESAAEPQPSFVAEKNEAKDLADADSLNFLDNFAEIALDETPEATLTTHEAPEIEDWETPVDTTAA ERANGDRPDAYVPNLADFEVDSDPFRDEAVDDLELEDLLEDPETPVAETATSLETTDLDAVDDETLFAFLNQDWHNHPGV TEITSLDGPETDRLPLPPLPENWLEQELAAEAEALPDLAESEANDGDSEADLGDFNETIADFGEDIFIEDLALGELPEDE LGDRLSQAFPDVTTADFDNDPEASSELTADDALPNEEFSEEEELDFTDSDLERLETLAAADLDDLLGSNEETLIETTEAD AAIAPEETITDHQDLPTDLEDLDAFDFNLFPTDLDENTLGPLNAPDLGSSDLALDLELDDDGDLDLDPDAFDADFELGAD PLATADPLAEEDFDLPSDFELDLEPIDHSNNTSDDSGSDIDSLEAPEALSEDDLEQFDDFEFDLDQMELSGEMALDPLDA SFDLDLEQQDFTEDIHVAPADPDAPPESTTDPDAWLSEGADPEEEDADIFNLGELDEAALLDFDLDQDHLSELEIEALDH QENSHDFEASEFSKETVIQADFQQPDDLSPQDAAALDFDDLDLDLDPQTLPPEAMALWDDDLDLTADLPSLGDESNGTSE ANHHHDATAAPTNDFSDDSWLEELDLSGELDPDFDLALDDENSAIDITSLDNLDQDSAIDLSASDAAIAPDGDLDLEEAL ADLEELSTFDSKDFDDFDFGDEAPLFLEEES >Mature_910_residues SLSDEFKQALRSGDLSKAFTMVASKAATLNITTRIVRHPDQGEPYPPDTSLHTQVDLINGTVENDVDEAVLNTAQYQNLQ HFHQQQVALGHRKIQENFQGLQQLFQLLVTLQQYDRLMNAEEPLDLKFLEIPNQTLMAATVKVVEPFSETPPESDKIPPL PHNSLPTVAPSAPTESAAEPQPSFVAEKNEAKDLADADSLNFLDNFAEIALDETPEATLTTHEAPEIEDWETPVDTTAAE RANGDRPDAYVPNLADFEVDSDPFRDEAVDDLELEDLLEDPETPVAETATSLETTDLDAVDDETLFAFLNQDWHNHPGVT EITSLDGPETDRLPLPPLPENWLEQELAAEAEALPDLAESEANDGDSEADLGDFNETIADFGEDIFIEDLALGELPEDEL GDRLSQAFPDVTTADFDNDPEASSELTADDALPNEEFSEEEELDFTDSDLERLETLAAADLDDLLGSNEETLIETTEADA AIAPEETITDHQDLPTDLEDLDAFDFNLFPTDLDENTLGPLNAPDLGSSDLALDLELDDDGDLDLDPDAFDADFELGADP LATADPLAEEDFDLPSDFELDLEPIDHSNNTSDDSGSDIDSLEAPEALSEDDLEQFDDFEFDLDQMELSGEMALDPLDAS FDLDLEQQDFTEDIHVAPADPDAPPESTTDPDAWLSEGADPEEEDADIFNLGELDEAALLDFDLDQDHLSELEIEALDHQ ENSHDFEASEFSKETVIQADFQQPDDLSPQDAAALDFDDLDLDLDPQTLPPEAMALWDDDLDLTADLPSLGDESNGTSEA NHHHDATAAPTNDFSDDSWLEELDLSGELDPDFDLALDDENSAIDITSLDNLDQDSAIDLSASDAAIAPDGDLDLEEALA DLEELSTFDSKDFDDFDFGDEAPLFLEEES
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 99967; Mature: 99836
Theoretical pI: Translated: 3.23; Mature: 3.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLSDEFKQALRSGDLSKAFTMVASKAATLNITTRIVRHPDQGEPYPPDTSLHTQVDLIN CCCHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEHHEEECCCCCCCCCCCCCCEEEEEEEC GTVENDVDEAVLNTAQYQNLQHFHQQQVALGHRKIQENFQGLQQLFQLLVTLQQYDRLMN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC AEEPLDLKFLEIPNQTLMAATVKVVEPFSETPPESDKIPPLPHNSLPTVAPSAPTESAAE CCCCCCEEEEECCCHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PQPSFVAEKNEAKDLADADSLNFLDNFAEIALDETPEATLTTHEAPEIEDWETPVDTTAA CCCCHHCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHH ERANGDRPDAYVPNLADFEVDSDPFRDEAVDDLELEDLLEDPETPVAETATSLETTDLDA HHCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCHHHHHCCCCCCHHHHHHCCCCCCCCC VDDETLFAFLNQDWHNHPGVTEITSLDGPETDRLPLPPLPENWLEQELAAEAEALPDLAE CCCHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHH SEANDGDSEADLGDFNETIADFGEDIFIEDLALGELPEDELGDRLSQAFPDVTTADFDND HCCCCCCCCCCCCHHHHHHHHCCCCEEEHHHHCCCCCHHHHHHHHHHHCCCCEECCCCCC PEASSELTADDALPNEEFSEEEELDFTDSDLERLETLAAADLDDLLGSNEETLIETTEAD CCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHCHHHHHCCCCCCEEEECCCC AAIAPEETITDHQDLPTDLEDLDAFDFNLFPTDLDENTLGPLNAPDLGSSDLALDLELDD CCCCCHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC DGDLDLDPDAFDADFELGADPLATADPLAEEDFDLPSDFELDLEPIDHSNNTSDDSGSDI CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC DSLEAPEALSEDDLEQFDDFEFDLDQMELSGEMALDPLDASFDLDLEQQDFTEDIHVAPA HHCCCCCCCCHHHHHHHCCCCCCHHHHHHCCCEEECCCCCCCCCCCCHHHCCCCCEECCC DPDAPPESTTDPDAWLSEGADPEEEDADIFNLGELDEAALLDFDLDQDHLSELEIEALDH CCCCCCCCCCCHHHHHHCCCCCCCCCCCEECCCCCCCHHEEECCCCHHHHHHHHHHHHCC QENSHDFEASEFSKETVIQADFQQPDDLSPQDAAALDFDDLDLDLDPQTLPPEAMALWDD CCCCCCCCHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEECC DLDLTADLPSLGDESNGTSEANHHHDATAAPTNDFSDDSWLEELDLSGELDPDFDLALDD CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEECC ENSAIDITSLDNLDQDSAIDLSASDAAIAPDGDLDLEEALADLEELSTFDSKDFDDFDFG CCCEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC DEAPLFLEEES CCCCEEEECCC >Mature Secondary Structure SLSDEFKQALRSGDLSKAFTMVASKAATLNITTRIVRHPDQGEPYPPDTSLHTQVDLIN CCHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEHHEEECCCCCCCCCCCCCCEEEEEEEC GTVENDVDEAVLNTAQYQNLQHFHQQQVALGHRKIQENFQGLQQLFQLLVTLQQYDRLMN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC AEEPLDLKFLEIPNQTLMAATVKVVEPFSETPPESDKIPPLPHNSLPTVAPSAPTESAAE CCCCCCEEEEECCCHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PQPSFVAEKNEAKDLADADSLNFLDNFAEIALDETPEATLTTHEAPEIEDWETPVDTTAA CCCCHHCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHH ERANGDRPDAYVPNLADFEVDSDPFRDEAVDDLELEDLLEDPETPVAETATSLETTDLDA HHCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCHHHHHCCCCCCHHHHHHCCCCCCCCC VDDETLFAFLNQDWHNHPGVTEITSLDGPETDRLPLPPLPENWLEQELAAEAEALPDLAE CCCHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHH SEANDGDSEADLGDFNETIADFGEDIFIEDLALGELPEDELGDRLSQAFPDVTTADFDND HCCCCCCCCCCCCHHHHHHHHCCCCEEEHHHHCCCCCHHHHHHHHHHHCCCCEECCCCCC PEASSELTADDALPNEEFSEEEELDFTDSDLERLETLAAADLDDLLGSNEETLIETTEAD CCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHCHHHHHCCCCCCEEEECCCC AAIAPEETITDHQDLPTDLEDLDAFDFNLFPTDLDENTLGPLNAPDLGSSDLALDLELDD CCCCCHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC DGDLDLDPDAFDADFELGADPLATADPLAEEDFDLPSDFELDLEPIDHSNNTSDDSGSDI CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC DSLEAPEALSEDDLEQFDDFEFDLDQMELSGEMALDPLDASFDLDLEQQDFTEDIHVAPA HHCCCCCCCCHHHHHHHCCCCCCHHHHHHCCCEEECCCCCCCCCCCCHHHCCCCCEECCC DPDAPPESTTDPDAWLSEGADPEEEDADIFNLGELDEAALLDFDLDQDHLSELEIEALDH CCCCCCCCCCCHHHHHHCCCCCCCCCCCEECCCCCCCHHEEECCCCHHHHHHHHHHHHCC QENSHDFEASEFSKETVIQADFQQPDDLSPQDAAALDFDDLDLDLDPQTLPPEAMALWDD CCCCCCCCHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEECC DLDLTADLPSLGDESNGTSEANHHHDATAAPTNDFSDDSWLEELDLSGELDPDFDLALDD CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEECC ENSAIDITSLDNLDQDSAIDLSASDAAIAPDGDLDLEEALADLEELSTFDSKDFDDFDFG CCCEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC DEAPLFLEEES CCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA