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The map label for this gene is avaIR [H]

Identifier: 170077806

GI number: 170077806

Start: 1231755

End: 1232708

Strand: Direct

Name: avaIR [H]

Synonym: SYNPCC7002_A1189

Alternate gene names: 170077806

Gene position: 1231755-1232708 (Clockwise)

Preceding gene: 302334807

Following gene: 170077807

Centisome position: 40.95

GC content: 39.1

Gene sequence:

>954_bases
TTGATGAAAAATAATCAGTTTGTAAACAATTCCAGTGACCTTGTGACGACAAAAGATGCTCGCAGAAGTGGTTTTCTTGA
ATATGCTCTTCGTCGCAATAAAGAGTCTATTCCATTTATCGACAAGGCGAAAGCTCTACAAGTATCTCTTCAGAAGAATA
CAAAGTGTGCAGAAGATATTCTCAAACTCTATGACATCCGAGAAACACTCATTGAGGCAGCGGGTGTATCTGTCAAGGCG
AAGGCTCACCTCGATGACATGGACAAAAATGAAATTCTTGCAGGCTTTGTTAAGGAGGTTCTTGCACCTTGTGGCAAAAA
GTATATCGATGAGATTGTCTATCGTTACTTGCTCACACTTGGAGATGCTCTTGGTGGTAAAATGCGCAACATTGTTGGTT
CTATCGCAGAAGAGAAATTCGTCAGATTTATCGTTGCCCAGTTACAGGTGCATGATATTGAATTTGAACTATTTCCAAAA
CGTTCGCAATGGATTTCAAACAAAAACTATAGAGCTGAGATGGCTGCACGAACGAAAGCCTTAAGATGGAAAAATAAAAC
AACTTATCGATCTCTAATTTTCAACATTAATGTTCCACAGGTCAAAAAGAATATTGATATCGTGCTGCTAAATGACAAGA
TTGAAGGAGTAACCTCGTCTATTTTGGCTAATATCCTTAACGATAAAAATAAGTATCTTGCCATCGGTGAGTTAAAGGGC
GGAATTGATCCAGCCGGGGCAGATGAACATTGGAAAACGGCAAATACAGCTCTTAGTAGAGTAAGAGATTCTTTCAAGAA
CAAAATCCACTTATTTTTCATTGGGGCTGCGATAGAAACCAGTATGTCGGCAGAGATTTACGAACAATGCCAGACAGGTG
AACTTAGTAACGCAGCAAATCTCACTGTTGATAATCAATTATCTGCATTGTGTGAGTGGCTAATAACGCAATAA

Upstream 100 bases:

>100_bases
AAAGTGACGATGACTCAGTTTGGACAAGTGGGTAATGCAGTACCGCCGTTACTTGCTGAAGCTGTTGCTAAAGCGGTTAG
CGAACAGCTTCTGGATGTCA

Downstream 100 bases:

>100_bases
CTTTACAAAATCAAACCCGATCGCCTCTCTATTTTGATAAATCTATGTCTACTCCCTCTGTTACCCCTGTAGAATCTAGC
ACCCTAATCAAAACCCCTGA

Product: type II site-specific deoxyribonuclease

Products: NA

Alternate protein names: R.AvaI; Endonuclease AvaI; Type II restriction enzyme AvaI [H]

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MMKNNQFVNNSSDLVTTKDARRSGFLEYALRRNKESIPFIDKAKALQVSLQKNTKCAEDILKLYDIRETLIEAAGVSVKA
KAHLDDMDKNEILAGFVKEVLAPCGKKYIDEIVYRYLLTLGDALGGKMRNIVGSIAEEKFVRFIVAQLQVHDIEFELFPK
RSQWISNKNYRAEMAARTKALRWKNKTTYRSLIFNINVPQVKKNIDIVLLNDKIEGVTSSILANILNDKNKYLAIGELKG
GIDPAGADEHWKTANTALSRVRDSFKNKIHLFFIGAAIETSMSAEIYEQCQTGELSNAANLTVDNQLSALCEWLITQ

Sequences:

>Translated_317_residues
MMKNNQFVNNSSDLVTTKDARRSGFLEYALRRNKESIPFIDKAKALQVSLQKNTKCAEDILKLYDIRETLIEAAGVSVKA
KAHLDDMDKNEILAGFVKEVLAPCGKKYIDEIVYRYLLTLGDALGGKMRNIVGSIAEEKFVRFIVAQLQVHDIEFELFPK
RSQWISNKNYRAEMAARTKALRWKNKTTYRSLIFNINVPQVKKNIDIVLLNDKIEGVTSSILANILNDKNKYLAIGELKG
GIDPAGADEHWKTANTALSRVRDSFKNKIHLFFIGAAIETSMSAEIYEQCQTGELSNAANLTVDNQLSALCEWLITQ
>Mature_317_residues
MMKNNQFVNNSSDLVTTKDARRSGFLEYALRRNKESIPFIDKAKALQVSLQKNTKCAEDILKLYDIRETLIEAAGVSVKA
KAHLDDMDKNEILAGFVKEVLAPCGKKYIDEIVYRYLLTLGDALGGKMRNIVGSIAEEKFVRFIVAQLQVHDIEFELFPK
RSQWISNKNYRAEMAARTKALRWKNKTTYRSLIFNINVPQVKKNIDIVLLNDKIEGVTSSILANILNDKNKYLAIGELKG
GIDPAGADEHWKTANTALSRVRDSFKNKIHLFFIGAAIETSMSAEIYEQCQTGELSNAANLTVDNQLSALCEWLITQ

Specific function: Recognizes the double-stranded sequence CYCGRG and cleaves after C-1 [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011335
- InterPro:   IPR015277
- InterPro:   IPR011544
- ProDom:   PD040871 [H]

Pfam domain/function: PF09194 Endonuc-BsobI [H]

EC number: =3.1.21.4 [H]

Molecular weight: Translated: 35770; Mature: 35770

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKNNQFVNNSSDLVTTKDARRSGFLEYALRRNKESIPFIDKAKALQVSLQKNTKCAEDI
CCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEHHHCCCHHHHHH
LKLYDIRETLIEAAGVSVKAKAHLDDMDKNEILAGFVKEVLAPCGKKYIDEIVYRYLLTL
HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GDALGGKMRNIVGSIAEEKFVRFIVAQLQVHDIEFELFPKRSQWISNKNYRAEMAARTKA
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHCCCCHHHHHHHHHHH
LRWKNKTTYRSLIFNINVPQVKKNIDIVLLNDKIEGVTSSILANILNDKNKYLAIGELKG
HHCCCCCCEEHEEEECCCCHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCC
GIDPAGADEHWKTANTALSRVRDSFKNKIHLFFIGAAIETSMSAEIYEQCQTGELSNAAN
CCCCCCCCCHHHHHHHHHHHHHHHHHCEEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCC
LTVDNQLSALCEWLITQ
CEEHHHHHHHHHHHHCC
>Mature Secondary Structure
MMKNNQFVNNSSDLVTTKDARRSGFLEYALRRNKESIPFIDKAKALQVSLQKNTKCAEDI
CCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEHHHCCCHHHHHH
LKLYDIRETLIEAAGVSVKAKAHLDDMDKNEILAGFVKEVLAPCGKKYIDEIVYRYLLTL
HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GDALGGKMRNIVGSIAEEKFVRFIVAQLQVHDIEFELFPKRSQWISNKNYRAEMAARTKA
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHCCCCHHHHHHHHHHH
LRWKNKTTYRSLIFNINVPQVKKNIDIVLLNDKIEGVTSSILANILNDKNKYLAIGELKG
HHCCCCCCEEHEEEECCCCHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCC
GIDPAGADEHWKTANTALSRVRDSFKNKIHLFFIGAAIETSMSAEIYEQCQTGELSNAAN
CCCCCCCCCHHHHHHHHHHHHHHHHHCEEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCC
LTVDNQLSALCEWLITQ
CEEHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8917312 [H]