Click here to switch to the map view.

The map label for this gene is ccs1

Identifier: 170077708

GI number: 170077708

Start: 1118440

End: 1119828

Strand: Reverse

Name: ccs1

Synonym: SYNPCC7002_A1088

Alternate gene names: 170077708

Gene position: 1119828-1118440 (Counterclockwise)

Preceding gene: 170077709

Following gene: 170077705

Centisome position: 37.23

GC content: 49.89

Gene sequence:

>1389_bases
ATGACAGTTTCTGATTCTTCTCCTAATTCTCCGTGGCACAGTTTTCCCCGCAAGGTCTGGCGCACGGGTTTAAAGTGGAT
TGCGGATCTCCGGGTGGCGATCGCCCTGCTGTTGCTCATTTCGGTATTTAGCATTTTAGGAACCGTCATCGAACAGGGCA
GTACCATCCAGTTTTACCAAGAGAACTACCCTGAAGATCCGGCGTTGTTGGGTTTTTTGTCTTGGAAAGTTCTATTAGGG
TTGGGACTGGATCATGTTTATACAACTTGGTGGTACTTGGTTTTGCTCCTCGCCTTTGGGGTGAGTTTGATCGCCTGTAC
CTTTCGGCGGCAACTGCCTGCCCTGAAAACAGCCCGAAATTGGAATTACTACAGCCAAGCCCGGCAATTTAATAAATTAG
CCCTGAGTACGGAATTGGATCATGGTTCGCTCCAGAGCCTAAAACCCCAACTCGAAAAAAAGCGCTACAAAATTTTCCAG
GACGGCGAAAAGCTCTATGCCCGGAAAGGGATTGTGGGGCGCATTGGGCCGATTATTGTCCACATCGGCATGATCGTCAC
CTTGGTGGGTTCTATTTGGGGAGCCTTTGGGGGGTTCATGGCCCAGGAGATGATTCCCAGCGGCGTGAATTTTAAGGTCA
ATAATGTGTTTAAGGCGGGGATTTTTTCCGAGAGCGATCGCCCTTGGTCGGTGAACGTAAATCGCTTTTGGATTGACTAC
ACCCCCACGGGTGACATTGATCAATTTTATTCGGATCTCTCGGTGGTCGATGGCGAGGGCCAGGAGCTTGAGCGCAAAAC
AATTTCTGTAAACCACCCCCTCCGCTACGATGGCATTACTTTTTATCAAACCAGTTGGTCTATTGGTGGTGTCCAAGTTC
AACTGAATAATAGTCCGATTTTTCAATTACCCGCCGCCCAAATCCCCACGGAGAATGGAGCGAAACTCTGGGGCAGTTGG
GTACCCATTAAGCCAGATATGAGTGCTGGAGTGTCGATCTTGATGCAGGATCTCCAGGGCAGTGCCATTGTCTATAACGA
GCAGGGAGAATTGGTCGGAGCGGTACGGGTTGGCGATCGCCTAGATGTGGGGGACATTAGCTTGAAATTGGTTGATCTTG
TTGGTAGCACTGGTCTCCAGATTAAAGCTGATCCCGGTGTCCCCGTGGTATACACAGGCTTTTTGTTGGTGATGCTTGGT
GTGGTGATGAGCTACGTTTCCTATTCCCAAGTGTGGGCCCTGGCCGCTGGCGATCGCTTTTATCTGGGAGGGAAAACCAA
TCGCGCCCAGGTGGCCTTTGAGCGGGAACTCCTGGAGATTATCAATACCCTCGAAACATCCCATTCCCAAGCAACCCCAG
AAAATACCTTGACATCAATTGAGCAATAA

Upstream 100 bases:

>100_bases
TTTCGCTTCTCATTCGCCTGCCCATTGGCCTCGCTTAGATTTTCCCTAACCCTGAACGGGCTTTTTTCTTGTTAATTTTT
CTTTTCTCATCCCCTAAACC

Downstream 100 bases:

>100_bases
AATAACCGATTGGGCTACACCAACGAGGAAGCCCAGTACTCCCCCCAAATTAACGATGGCTTGGAGTTCATTTTTGACAA
TGCCCTGGATGGCGCGTTCT

Product: c-type cytochrome biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 462; Mature: 461

Protein sequence:

>462_residues
MTVSDSSPNSPWHSFPRKVWRTGLKWIADLRVAIALLLLISVFSILGTVIEQGSTIQFYQENYPEDPALLGFLSWKVLLG
LGLDHVYTTWWYLVLLLAFGVSLIACTFRRQLPALKTARNWNYYSQARQFNKLALSTELDHGSLQSLKPQLEKKRYKIFQ
DGEKLYARKGIVGRIGPIIVHIGMIVTLVGSIWGAFGGFMAQEMIPSGVNFKVNNVFKAGIFSESDRPWSVNVNRFWIDY
TPTGDIDQFYSDLSVVDGEGQELERKTISVNHPLRYDGITFYQTSWSIGGVQVQLNNSPIFQLPAAQIPTENGAKLWGSW
VPIKPDMSAGVSILMQDLQGSAIVYNEQGELVGAVRVGDRLDVGDISLKLVDLVGSTGLQIKADPGVPVVYTGFLLVMLG
VVMSYVSYSQVWALAAGDRFYLGGKTNRAQVAFERELLEIINTLETSHSQATPENTLTSIEQ

Sequences:

>Translated_462_residues
MTVSDSSPNSPWHSFPRKVWRTGLKWIADLRVAIALLLLISVFSILGTVIEQGSTIQFYQENYPEDPALLGFLSWKVLLG
LGLDHVYTTWWYLVLLLAFGVSLIACTFRRQLPALKTARNWNYYSQARQFNKLALSTELDHGSLQSLKPQLEKKRYKIFQ
DGEKLYARKGIVGRIGPIIVHIGMIVTLVGSIWGAFGGFMAQEMIPSGVNFKVNNVFKAGIFSESDRPWSVNVNRFWIDY
TPTGDIDQFYSDLSVVDGEGQELERKTISVNHPLRYDGITFYQTSWSIGGVQVQLNNSPIFQLPAAQIPTENGAKLWGSW
VPIKPDMSAGVSILMQDLQGSAIVYNEQGELVGAVRVGDRLDVGDISLKLVDLVGSTGLQIKADPGVPVVYTGFLLVMLG
VVMSYVSYSQVWALAAGDRFYLGGKTNRAQVAFERELLEIINTLETSHSQATPENTLTSIEQ
>Mature_461_residues
TVSDSSPNSPWHSFPRKVWRTGLKWIADLRVAIALLLLISVFSILGTVIEQGSTIQFYQENYPEDPALLGFLSWKVLLGL
GLDHVYTTWWYLVLLLAFGVSLIACTFRRQLPALKTARNWNYYSQARQFNKLALSTELDHGSLQSLKPQLEKKRYKIFQD
GEKLYARKGIVGRIGPIIVHIGMIVTLVGSIWGAFGGFMAQEMIPSGVNFKVNNVFKAGIFSESDRPWSVNVNRFWIDYT
PTGDIDQFYSDLSVVDGEGQELERKTISVNHPLRYDGITFYQTSWSIGGVQVQLNNSPIFQLPAAQIPTENGAKLWGSWV
PIKPDMSAGVSILMQDLQGSAIVYNEQGELVGAVRVGDRLDVGDISLKLVDLVGSTGLQIKADPGVPVVYTGFLLVMLGV
VMSYVSYSQVWALAAGDRFYLGGKTNRAQVAFERELLEIINTLETSHSQATPENTLTSIEQ

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment

COG id: COG1333

COG function: function code O; ResB protein required for cytochrome c biosynthesis

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccs1/ccsB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CCS1_SYNP2 (O68616)

Other databases:

- EMBL:   AF052290
- EMBL:   CP000951
- RefSeq:   YP_001734346.1
- GeneID:   6056590
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A1088
- HOGENOM:   HBG635079
- OMA:   TIYQADW
- ProtClustDB:   CLSK893068
- HAMAP:   MF_01392
- InterPro:   IPR007816

Pfam domain/function: PF05140 ResB

EC number: NA

Molecular weight: Translated: 51397; Mature: 51265

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1abba86c)-; HASH(0x1b701278)-; HASH(0x1b6053a8)-;

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVSDSSPNSPWHSFPRKVWRTGLKWIADLRVAIALLLLISVFSILGTVIEQGSTIQFYQ
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHH
ENYPEDPALLGFLSWKVLLGLGLDHVYTTWWYLVLLLAFGVSLIACTFRRQLPALKTARN
CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
WNYYSQARQFNKLALSTELDHGSLQSLKPQLEKKRYKIFQDGEKLYARKGIVGRIGPIIV
CCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHH
HIGMIVTLVGSIWGAFGGFMAQEMIPSGVNFKVNNVFKAGIFSESDRPWSVNVNRFWIDY
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCEEEECCCCCCCCCEEEEEEEEEEEE
TPTGDIDQFYSDLSVVDGEGQELERKTISVNHPLRYDGITFYQTSWSIGGVQVQLNNSPI
CCCCCHHHHHHCCCEECCCCCHHHHHEEECCCCEEECCEEEEEECCCCCCEEEEECCCCE
FQLPAAQIPTENGAKLWGSWVPIKPDMSAGVSILMQDLQGSAIVYNEQGELVGAVRVGDR
EECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCC
LDVGDISLKLVDLVGSTGLQIKADPGVPVVYTGFLLVMLGVVMSYVSYSQVWALAAGDRF
CCCCCHHEEEEEHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEE
YLGGKTNRAQVAFERELLEIINTLETSHSQATPENTLTSIEQ
EECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCH
>Mature Secondary Structure 
TVSDSSPNSPWHSFPRKVWRTGLKWIADLRVAIALLLLISVFSILGTVIEQGSTIQFYQ
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHH
ENYPEDPALLGFLSWKVLLGLGLDHVYTTWWYLVLLLAFGVSLIACTFRRQLPALKTARN
CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
WNYYSQARQFNKLALSTELDHGSLQSLKPQLEKKRYKIFQDGEKLYARKGIVGRIGPIIV
CCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHH
HIGMIVTLVGSIWGAFGGFMAQEMIPSGVNFKVNNVFKAGIFSESDRPWSVNVNRFWIDY
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCEEEECCCCCCCCCEEEEEEEEEEEE
TPTGDIDQFYSDLSVVDGEGQELERKTISVNHPLRYDGITFYQTSWSIGGVQVQLNNSPI
CCCCCHHHHHHCCCEECCCCCHHHHHEEECCCCEEECCEEEEEECCCCCCEEEEECCCCE
FQLPAAQIPTENGAKLWGSWVPIKPDMSAGVSILMQDLQGSAIVYNEQGELVGAVRVGDR
EECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCC
LDVGDISLKLVDLVGSTGLQIKADPGVPVVYTGFLLVMLGVVMSYVSYSQVWALAAGDRF
CCCCCHHEEEEEHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEE
YLGGKTNRAQVAFERELLEIINTLETSHSQATPENTLTSIEQ
EECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA