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The map label for this gene is rnpA

Identifier: 170077610

GI number: 170077610

Start: 1016370

End: 1016720

Strand: Direct

Name: rnpA

Synonym: SYNPCC7002_A0989

Alternate gene names: 170077610

Gene position: 1016370-1016720 (Clockwise)

Preceding gene: 170077609

Following gene: 170077611

Centisome position: 33.79

GC content: 48.15

Gene sequence:

>351_bases
GTGGGACTGCCAAAAGAACACCGTCTAAAACACTGGCGCGATTTTAAAACGATCTACAGTCAAGGGAAACGCTTCCGGGG
AGATGCCCTAGCAATCATTCTCTTACCTCAGCCAGCGGCCCCAACCAAAATTGGCATCAGCATCAGCCGCAAAGTCAGTA
AAAAAGCAGTGGTTCGGAATTTAATCAAACGCCGTATTCGCCACGCCTGTCGCACGCTACTGCCCCAGATTCAACCCGGT
TGGCACATCGTCATTGCTGTGCGGTACAACGCCAGAGAATGCGAATATGAGCATTTTTTGCAAGAATTAAAAAGATTACT
CATACAAGCCGAGGTATTCCATGGGCATTAA

Upstream 100 bases:

>100_bases
CCGCAGAAAAAAAGGCCGTCATCGCCTTACTGTCTAATCCAGCGCGCAAACCATTATTTTGGTGAGGGGACTTGCCGTCT
ACCTCACTCTCATTTTCTTT

Downstream 100 bases:

>100_bases
AGAAGACGTGATTTATGAGGGCGGCCCCCACATTGGGGATCTGATCCTCAATATCTTGCTGGGGTTCACGGTGATCTGTC
TGCCGCTGACCGTCGGGGCG

Product: ribonuclease P

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MGLPKEHRLKHWRDFKTIYSQGKRFRGDALAIILLPQPAAPTKIGISISRKVSKKAVVRNLIKRRIRHACRTLLPQIQPG
WHIVIAVRYNARECEYEHFLQELKRLLIQAEVFHGH

Sequences:

>Translated_116_residues
MGLPKEHRLKHWRDFKTIYSQGKRFRGDALAIILLPQPAAPTKIGISISRKVSKKAVVRNLIKRRIRHACRTLLPQIQPG
WHIVIAVRYNARECEYEHFLQELKRLLIQAEVFHGH
>Mature_115_residues
GLPKEHRLKHWRDFKTIYSQGKRFRGDALAIILLPQPAAPTKIGISISRKVSKKAVVRNLIKRRIRHACRTLLPQIQPGW
HIVIAVRYNARECEYEHFLQELKRLLIQAEVFHGH

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_SYNP2 (B1XJD2)

Other databases:

- EMBL:   CP000951
- RefSeq:   YP_001734248.1
- ProteinModelPortal:   B1XJD2
- SMR:   B1XJD2
- GeneID:   6057320
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A0989
- HOGENOM:   HBG728160
- OMA:   YEHFLRE
- ProtClustDB:   PRK03031
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- InterPro:   IPR020539
- Gene3D:   G3DSA:3.30.230.10
- ProDom:   PD003629
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 13607; Mature: 13476

Theoretical pI: Translated: 11.43; Mature: 11.43

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLPKEHRLKHWRDFKTIYSQGKRFRGDALAIILLPQPAAPTKIGISISRKVSKKAVVRN
CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCEECHHHHHHHHHHHHHHH
LIKRRIRHACRTLLPQIQPGWHIVIAVRYNARECEYEHFLQELKRLLIQAEVFHGH
HHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GLPKEHRLKHWRDFKTIYSQGKRFRGDALAIILLPQPAAPTKIGISISRKVSKKAVVRN
CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCEECHHHHHHHHHHHHHHH
LIKRRIRHACRTLLPQIQPGWHIVIAVRYNARECEYEHFLQELKRLLIQAEVFHGH
HHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA