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The map label for this gene is deoC

Identifier: 170077379

GI number: 170077379

Start: 786863

End: 787549

Strand: Direct

Name: deoC

Synonym: SYNPCC7002_A0756

Alternate gene names: 170077379

Gene position: 786863-787549 (Clockwise)

Preceding gene: 170077378

Following gene: 170077380

Centisome position: 26.16

GC content: 51.53

Gene sequence:

>687_bases
ATGGCGATTCCCGCAAACGAAATTGATTTAGCCCGGTATCTCGAACATTCCCTGTTGCACCCAGCGGCCACCGAAGCCCA
GGTCAAAGAATGCTGTGAGGCGGCAGTCCAATTTGATTTTCCGGCGGTATGTCTCTACCCAACGGCGATCAAAACAGCCC
GGGATTTCTTGCACCAGCGACCCATTCAAATTTGTTCTGTGGTGGGTTTTCCCGCCGGGGCTCATACGACCGCAACCAAA
CTCTACGAAGCCCAGGAAGCGGTAGAAAATGGAGCAACAGAATTAGACGTCATGCTGAACTTAGCCTTTGTAAAAATGGG
GGAATCAGAGAAGCTCTATCAGGAAGTGGCGCAAATCGTCGAGCTGACGAAAGTTCCCATCAAAGGCATTTTAGAAACGG
CCCTTTTAACAGACACCGAAAAACGACTCGCCGCAGAGATTTGCCTCGATGCAGGGGTGAGCTATCTCAAAACCTCAACG
GGCTGGTTCGGCGGTACAACGGTAGCTGATGTGAAATTACTCTATGGGATCACCAAAGGCCGCATTGGCATCAAAGCAGC
GGGGGGGATCAAAACGGTTGACCAGGCGATCGCCTTAATTCAGGCTGGAGCAACCCGCCTTGGCACGTCCCGGAGTATCA
AGATTATGCAGGAAAGGGAACAAGTGAGCGATAACCCAACTTGGTAA

Upstream 100 bases:

>100_bases
GGGATTTTTTTGTGGATTTTGTGCCTGGGTAGTTTCTAGAGAAGCACCAGAAAACGAACAATTTCTGCCACAATCAAAGG
AAGTACACTTCCCAAAAACC

Downstream 100 bases:

>100_bases
ATACGGCATGTCTTTTAAAGTCACAGGCATCATCCTCAAAGGCAGTCCCCTGGGCGAAGCGGATCGACTGGTGACGATTC
TGTCGCCAGAACAAGGATTG

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MAIPANEIDLARYLEHSLLHPAATEAQVKECCEAAVQFDFPAVCLYPTAIKTARDFLHQRPIQICSVVGFPAGAHTTATK
LYEAQEAVENGATELDVMLNLAFVKMGESEKLYQEVAQIVELTKVPIKGILETALLTDTEKRLAAEICLDAGVSYLKTST
GWFGGTTVADVKLLYGITKGRIGIKAAGGIKTVDQAIALIQAGATRLGTSRSIKIMQEREQVSDNPTW

Sequences:

>Translated_228_residues
MAIPANEIDLARYLEHSLLHPAATEAQVKECCEAAVQFDFPAVCLYPTAIKTARDFLHQRPIQICSVVGFPAGAHTTATK
LYEAQEAVENGATELDVMLNLAFVKMGESEKLYQEVAQIVELTKVPIKGILETALLTDTEKRLAAEICLDAGVSYLKTST
GWFGGTTVADVKLLYGITKGRIGIKAAGGIKTVDQAIALIQAGATRLGTSRSIKIMQEREQVSDNPTW
>Mature_227_residues
AIPANEIDLARYLEHSLLHPAATEAQVKECCEAAVQFDFPAVCLYPTAIKTARDFLHQRPIQICSVVGFPAGAHTTATKL
YEAQEAVENGATELDVMLNLAFVKMGESEKLYQEVAQIVELTKVPIKGILETALLTDTEKRLAAEICLDAGVSYLKTSTG
WFGGTTVADVKLLYGITKGRIGIKAAGGIKTVDQAIALIQAGATRLGTSRSIKIMQEREQVSDNPTW

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily

Homologues:

Organism=Homo sapiens, GI116063554, Length=180, Percent_Identity=36.1111111111111, Blast_Score=77, Evalue=1e-14,
Organism=Escherichia coli, GI1790841, Length=168, Percent_Identity=29.7619047619048, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17533015, Length=172, Percent_Identity=30.8139534883721, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI19922098, Length=177, Percent_Identity=32.2033898305085, Blast_Score=75, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOC_SYNP2 (B1XI10)

Other databases:

- EMBL:   CP000951
- RefSeq:   YP_001734017.1
- ProteinModelPortal:   B1XI10
- SMR:   B1XI10
- GeneID:   6057302
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A0756
- HOGENOM:   HBG636421
- OMA:   GANTPEV
- ProtClustDB:   PRK00507
- GO:   GO:0005737
- HAMAP:   MF_00114
- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10889
- PIRSF:   PIRSF001357
- TIGRFAMs:   TIGR00126

Pfam domain/function: PF01791 DeoC

EC number: =4.1.2.4

Molecular weight: Translated: 24652; Mature: 24520

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: NA

Important sites: ACT_SITE 157-157 ACT_SITE 185-185

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIPANEIDLARYLEHSLLHPAATEAQVKECCEAAVQFDFPAVCLYPTAIKTARDFLHQR
CCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
PIQICSVVGFPAGAHTTATKLYEAQEAVENGATELDVMLNLAFVKMGESEKLYQEVAQIV
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ELTKVPIKGILETALLTDTEKRLAAEICLDAGVSYLKTSTGWFGGTTVADVKLLYGITKG
HHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCHHHHHHHHHHHHCC
RIGIKAAGGIKTVDQAIALIQAGATRLGTSRSIKIMQEREQVSDNPTW
CEEEEECCCHHHHHHHHHHHHHCHHHCCCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AIPANEIDLARYLEHSLLHPAATEAQVKECCEAAVQFDFPAVCLYPTAIKTARDFLHQR
CCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
PIQICSVVGFPAGAHTTATKLYEAQEAVENGATELDVMLNLAFVKMGESEKLYQEVAQIV
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ELTKVPIKGILETALLTDTEKRLAAEICLDAGVSYLKTSTGWFGGTTVADVKLLYGITKG
HHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCHHHHHHHHHHHHCC
RIGIKAAGGIKTVDQAIALIQAGATRLGTSRSIKIMQEREQVSDNPTW
CEEEEECCCHHHHHHHHHHHHHCHHHCCCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA