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The map label for this gene is rpoZ

Identifier: 170077238

GI number: 170077238

Start: 644409

End: 644636

Strand: Direct

Name: rpoZ

Synonym: SYNPCC7002_A0614

Alternate gene names: 170077238

Gene position: 644409-644636 (Clockwise)

Preceding gene: 170077237

Following gene: 170077239

Centisome position: 21.42

GC content: 51.75

Gene sequence:

>228_bases
ATGCAAAAACGTAGCTCCTTCGATTCTGCAGAAATTATGCACCGGGCTGAAGATCTAATGCAGGCCGCATCCAATCGTTA
CCGCATTACCGTGCAGGTGGCTCAGCGGGCTAAGCGCCGCCGTTACGAAGAATTTGATGCCGTTGAAGACCCGTTAATGA
AGCCGCCGATCCGCGCCATTATCGAGATGTCCGATGAACTGACCCAGCCTGAAATTATTGGCGAATAG

Upstream 100 bases:

>100_bases
AGAGCGCGATCGCCTCATGGAAGAATAACCAGGCGAACTCCCCCACACCGTTATAATGGAAAGCCTGAATACCCAACCCA
CAGATTTATTACCACCTCGT

Downstream 100 bases:

>100_bases
TTCAAACCATATTCTTGTTTAGGTTTACCGTTCCTAAGGGGTTAACGGGTAGCCTTTAACCAGAAAATCCGCAAGAAGTT
TGTGGGGAGCGATGTATTGC

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 75; Mature: 75

Protein sequence:

>75_residues
MQKRSSFDSAEIMHRAEDLMQAASNRYRITVQVAQRAKRRRYEEFDAVEDPLMKPPIRAIIEMSDELTQPEIIGE

Sequences:

>Translated_75_residues
MQKRSSFDSAEIMHRAEDLMQAASNRYRITVQVAQRAKRRRYEEFDAVEDPLMKPPIRAIIEMSDELTQPEIIGE
>Mature_75_residues
MQKRSSFDSAEIMHRAEDLMQAASNRYRITVQVAQRAKRRRYEEFDAVEDPLMKPPIRAIIEMSDELTQPEIIGE

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_SYNP2 (B1XPZ2)

Other databases:

- EMBL:   CP000951
- RefSeq:   YP_001733876.1
- GeneID:   6055625
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A0614
- HOGENOM:   HBG284825
- OMA:   RYRITVQ
- ProtClustDB:   PRK00392
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 8795; Mature: 8795

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.7 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.7 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKRSSFDSAEIMHRAEDLMQAASNRYRITVQVAQRAKRRRYEEFDAVEDPLMKPPIRAI
CCCCCCCCHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
IEMSDELTQPEIIGE
HHHHHHCCCCCCCCC
>Mature Secondary Structure
MQKRSSFDSAEIMHRAEDLMQAASNRYRITVQVAQRAKRRRYEEFDAVEDPLMKPPIRAI
CCCCCCCCHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
IEMSDELTQPEIIGE
HHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA