| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is trpH [C]
Identifier: 170077174
GI number: 170077174
Start: 576633
End: 577325
Strand: Direct
Name: trpH [C]
Synonym: SYNPCC7002_A0549
Alternate gene names: 170077174
Gene position: 576633-577325 (Clockwise)
Preceding gene: 170077173
Following gene: 170077175
Centisome position: 19.17
GC content: 54.69
Gene sequence:
>693_bases ATGACTTCTACTTTGTCTGTTCCAAGTGCGGCTCAAGATTTGCAAGCGCTCGAAAAGGCTTGGCGCAGTCTAACGGCAAC CAGTTGCCCCAATCAGTACAACTTCCACATGCATTCGGTCTGTTCCGATGGTCAACTCACCCCAACAGAAATTGTTGACC AGGCGATCGCCATCGGTCTAAAAGGCTTTGCGATCACTGACCACCACACCATCCACGGCTATCACCAGGCCCAAAGCTAC CTCAGCCGACAGCAGCAGAATGATACGACACGACCCTTGCCCCACCTCTGGACGGGCATCGAAATTAACGGCATCCTCCT TGACACCACAGTACATATCCTTGCCTATGGGTTTAACCCCGATCACAGTGCGATCACCCCTTACTTTAACCGGGAAATTC CGGAAGGCGATCGCGCCGCAGCAGCAGTGATTATTGACGCGATCCATGCCGCTGGAGGCTTAGCTGTTCTGGCGCATCCC GCCCGTTATCGTCGTCCTGCCACGGAGTTAATCCCGGCAGCAGCATCCCTTAACATTGATGGTGTAGAAGCCTATTACGC CTACGACAACCCGAAACCCTGGGTGCCTAGCCAAAAACATACCCCGGTGGTGGCTGCCCTTGGCCATCGGCACAATCTAT GGCTCACCTGCGGCACAGATACCCATGGTCGCAGCCTCCAGCAACGACTTTAG
Upstream 100 bases:
>100_bases ACAATTTGCAATATCTAATCTTTTTTTCAGGTTTTCTTTACCCTTTTATTACCATCCCGCTCGCCCTTTAAATCTGCGAT CGCCAAAGATCGCCTTCGCC
Downstream 100 bases:
>100_bases GGATCGCTGCGAAACTTTGATCCCCGCATAGCAAAATTCTGGCCTAAAATAAACTTACCCAAGGAATATTTTCCTCCTTT GCCCCCATTAATCCTGCCGC
Product: PHP family metal-dependent phosphoesterase
Products: NA
Alternate protein names: Phosphotransferase Domain-Containing Protein; PHP Domain Protein; PHP Family Metal-Dependent Phosphoesterase; Phosphoesterase PHP-Like; PHP Domain-Containing Protein
Number of amino acids: Translated: 230; Mature: 229
Protein sequence:
>230_residues MTSTLSVPSAAQDLQALEKAWRSLTATSCPNQYNFHMHSVCSDGQLTPTEIVDQAIAIGLKGFAITDHHTIHGYHQAQSY LSRQQQNDTTRPLPHLWTGIEINGILLDTTVHILAYGFNPDHSAITPYFNREIPEGDRAAAAVIIDAIHAAGGLAVLAHP ARYRRPATELIPAAASLNIDGVEAYYAYDNPKPWVPSQKHTPVVAALGHRHNLWLTCGTDTHGRSLQQRL
Sequences:
>Translated_230_residues MTSTLSVPSAAQDLQALEKAWRSLTATSCPNQYNFHMHSVCSDGQLTPTEIVDQAIAIGLKGFAITDHHTIHGYHQAQSY LSRQQQNDTTRPLPHLWTGIEINGILLDTTVHILAYGFNPDHSAITPYFNREIPEGDRAAAAVIIDAIHAAGGLAVLAHP ARYRRPATELIPAAASLNIDGVEAYYAYDNPKPWVPSQKHTPVVAALGHRHNLWLTCGTDTHGRSLQQRL >Mature_229_residues TSTLSVPSAAQDLQALEKAWRSLTATSCPNQYNFHMHSVCSDGQLTPTEIVDQAIAIGLKGFAITDHHTIHGYHQAQSYL SRQQQNDTTRPLPHLWTGIEINGILLDTTVHILAYGFNPDHSAITPYFNREIPEGDRAAAAVIIDAIHAAGGLAVLAHPA RYRRPATELIPAAASLNIDGVEAYYAYDNPKPWVPSQKHTPVVAALGHRHNLWLTCGTDTHGRSLQQRL
Specific function: Unknown
COG id: COG0613
COG function: function code R; Predicted metal-dependent phosphoesterases (PHP family)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25206; Mature: 25074
Theoretical pI: Translated: 6.93; Mature: 6.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSTLSVPSAAQDLQALEKAWRSLTATSCPNQYNFHMHSVCSDGQLTPTEIVDQAIAIGL CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCC KGFAITDHHTIHGYHQAQSYLSRQQQNDTTRPLPHLWTGIEINGILLDTTVHILAYGFNP CCEEEECCCEECCHHHHHHHHHHHHCCCCCCCCCHHCCCEEECCEEEEEEEEEEEECCCC DHSAITPYFNREIPEGDRAAAAVIIDAIHAAGGLAVLAHPARYRRPATELIPAAASLNID CCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHCCCHHHHHCHHHCCCCC GVEAYYAYDNPKPWVPSQKHTPVVAALGHRHNLWLTCGTDTHGRSLQQRL CEEEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCHHHHHCC >Mature Secondary Structure TSTLSVPSAAQDLQALEKAWRSLTATSCPNQYNFHMHSVCSDGQLTPTEIVDQAIAIGL CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCC KGFAITDHHTIHGYHQAQSYLSRQQQNDTTRPLPHLWTGIEINGILLDTTVHILAYGFNP CCEEEECCCEECCHHHHHHHHHHHHCCCCCCCCCHHCCCEEECCEEEEEEEEEEEECCCC DHSAITPYFNREIPEGDRAAAAVIIDAIHAAGGLAVLAHPARYRRPATELIPAAASLNID CCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHCCCHHHHHCHHHCCCCC GVEAYYAYDNPKPWVPSQKHTPVVAALGHRHNLWLTCGTDTHGRSLQQRL CEEEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA