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The map label for this gene is pyrF [H]

Identifier: 170077172

GI number: 170077172

Start: 574503

End: 575192

Strand: Reverse

Name: pyrF [H]

Synonym: SYNPCC7002_A0547

Alternate gene names: 170077172

Gene position: 575192-574503 (Counterclockwise)

Preceding gene: 170077177

Following gene: 170077171

Centisome position: 19.12

GC content: 56.67

Gene sequence:

>690_bases
ATGCAAGATACTGTGATTGTGCCCCTGGATGTGCCGGATCTCCCTGCGGCGATCGCCTTAGTCGAGAGCTTACCGGAGGT
CACTTTCTGGAAAGTGGGCCTAGAATTATTTGTCGCCACTGGGCCGGATATTTTGCGCTACCTCAAAGACCAGGGCAAAC
GCATTTTTCTTGATCTCAAATTCCACGACATTCCCAATACCGTTGCTGGTGCCTGCCGTTCGGCGCGGGCCTATGGGGTC
GATCTTCTGACTATCCACGGTGCTGCCGGGGCGATCGCCTTAACGGCTGCCAAAGAAGCCCTCGGAGATTCTCCGACTAA
ACTAATTGCGATTACCGTCCTCACCAGTATTAGTCCAGACCAGTTGCGGGACGATTTGCAAGTGGATCTGCCCCTCGATG
CCTTTGCCCAACACATGGCCAACCTGGCCCAAGGCGCTGGGTTAGATGGGGCGGTGTGTTCCCCCCAGGAAGTGGCGATG
CTGCGGCAATGTTGCGGTCAAGATTTCACCTTGGTTTGTCCAGGGGTACGGCCCACCTGGGCTCAATCAGGGGATCAACA
GCGGGTCATGACTCCCCAGGCGGCAATCCAACAGGGGGCAAATCACCTCGTCATTGGCCGACCGATCACCCAGGCCGCAG
ATCCCCAAGCGGCTTGGCAGAAAATTCAAGCAGAGTTGGCGATCGCCTAA

Upstream 100 bases:

>100_bases
GGTGGGATTTTGCCAATGGGTGAGCCTTGTCTCAAAAAGCTCAAAACACCGTTATGCTGAACATGACCGTCTCTAATGAA
ATTTACGCAAGCAATAACTG

Downstream 100 bases:

>100_bases
ATCATTCACCCCAGCAAATCCAGAGACGGAAGACTAAAGATACAATGGCTTAAGTATTCCTGCTTACATTTAGGATTGAT
TTCACACTAATTACCTATGG

Product: orotidine 5'-phosphate decarboxylase

Products: NA

Alternate protein names: OMP decarboxylase; OMPDCase; OMPdecase [H]

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MQDTVIVPLDVPDLPAAIALVESLPEVTFWKVGLELFVATGPDILRYLKDQGKRIFLDLKFHDIPNTVAGACRSARAYGV
DLLTIHGAAGAIALTAAKEALGDSPTKLIAITVLTSISPDQLRDDLQVDLPLDAFAQHMANLAQGAGLDGAVCSPQEVAM
LRQCCGQDFTLVCPGVRPTWAQSGDQQRVMTPQAAIQQGANHLVIGRPITQAADPQAAWQKIQAELAIA

Sequences:

>Translated_229_residues
MQDTVIVPLDVPDLPAAIALVESLPEVTFWKVGLELFVATGPDILRYLKDQGKRIFLDLKFHDIPNTVAGACRSARAYGV
DLLTIHGAAGAIALTAAKEALGDSPTKLIAITVLTSISPDQLRDDLQVDLPLDAFAQHMANLAQGAGLDGAVCSPQEVAM
LRQCCGQDFTLVCPGVRPTWAQSGDQQRVMTPQAAIQQGANHLVIGRPITQAADPQAAWQKIQAELAIA
>Mature_229_residues
MQDTVIVPLDVPDLPAAIALVESLPEVTFWKVGLELFVATGPDILRYLKDQGKRIFLDLKFHDIPNTVAGACRSARAYGV
DLLTIHGAAGAIALTAAKEALGDSPTKLIAITVLTSISPDQLRDDLQVDLPLDAFAQHMANLAQGAGLDGAVCSPQEVAM
LRQCCGQDFTLVCPGVRPTWAQSGDQQRVMTPQAAIQQGANHLVIGRPITQAADPQAAWQKIQAELAIA

Specific function: Catalyzes the decarboxylation of orotidine 5'- monophosphate (OMP) to uridine 5'-monophosphate (UMP) [H]

COG id: COG0284

COG function: function code F; Orotidine-5'-phosphate decarboxylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OMP decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787537, Length=226, Percent_Identity=45.1327433628319, Blast_Score=179, Evalue=9e-47,

Paralogues:

None

Copy number: 6,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR014732
- InterPro:   IPR018089
- InterPro:   IPR001754
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00215 OMPdecase [H]

EC number: =4.1.1.23 [H]

Molecular weight: Translated: 24336; Mature: 24336

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS00156 OMPDECASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDTVIVPLDVPDLPAAIALVESLPEVTFWKVGLELFVATGPDILRYLKDQGKRIFLDLK
CCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHCEEEEEECCHHHHHHHHHCCCEEEEEEE
FHDIPNTVAGACRSARAYGVDLLTIHGAAGAIALTAAKEALGDSPTKLIAITVLTSISPD
ECCCCHHHHHHHHCCHHCCEEEEEEECCCCHHHHHHHHHHHCCCCHHEEEEEEECCCCHH
QLRDDLQVDLPLDAFAQHMANLAQGAGLDGAVCSPQEVAMLRQCCGQDFTLVCPGVRPTW
HHHCCCEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHH
AQSGDQQRVMTPQAAIQQGANHLVIGRPITQAADPQAAWQKIQAELAIA
HCCCCCCCEECHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQDTVIVPLDVPDLPAAIALVESLPEVTFWKVGLELFVATGPDILRYLKDQGKRIFLDLK
CCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHCEEEEEECCHHHHHHHHHCCCEEEEEEE
FHDIPNTVAGACRSARAYGVDLLTIHGAAGAIALTAAKEALGDSPTKLIAITVLTSISPD
ECCCCHHHHHHHHCCHHCCEEEEEEECCCCHHHHHHHHHHHCCCCHHEEEEEEECCCCHH
QLRDDLQVDLPLDAFAQHMANLAQGAGLDGAVCSPQEVAMLRQCCGQDFTLVCPGVRPTW
HHHCCCEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHH
AQSGDQQRVMTPQAAIQQGANHLVIGRPITQAADPQAAWQKIQAELAIA
HCCCCCCCEECHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA