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The map label for this gene is rsmB [H]

Identifier: 170077132

GI number: 170077132

Start: 537147

End: 538490

Strand: Direct

Name: rsmB [H]

Synonym: SYNPCC7002_A0507

Alternate gene names: 170077132

Gene position: 537147-538490 (Clockwise)

Preceding gene: 170077130

Following gene: 170077134

Centisome position: 17.86

GC content: 53.94

Gene sequence:

>1344_bases
ATGTCTTCAGCCCGCCAACTCGCCTTCCTCGCCCTCCGGCAAATCATGTACCACAACGCCTATACCGATGTGGCCCTTGA
TCGAGTCCTCCACAAAAGTAACCTCACCGGGAGCGATCGCGCTTTAGTTGCCGAATTAGTCTATGGTACTGTCCGTCGCC
AAAAAACCCTCGATGCGATCATTGACCAACTAGGAAAAAAGCCCATTGACCAACAACCGCCTGATCTACGGGTACTCCTT
CAACTGGGTTTGTACCAACTGCGTTACTTAGATCAAATTCCCCCCTCGGCGGCGGTCAATACCAGCGTTGAAATTGCAAA
AACCAACAAGCTAGGCCAATTAGCAGGGGTGGTAAATGGCTGTCTGCGCGGTTATCTGCGGCAACGGGACAAAGGCCATG
ATCCGCTCCAGTTACCAGAGGCAGCGGCAGAGCGGCTAGCTTTGCAATACAGTTTTCCGGAATGGCTGATTGGACAATGG
CTTGAACAATTTGGAGCGGAGGAAACGGAACAGCTTTGTCAATGGTTTAATCGGCCTGCCCAACTGGATCTCCGGGTAAA
TCCCCTCCGGGCGAATGTCGCCGCTGTCCAGGATAAGCTCAACCAGGCAGGGGTCAAAGCCGAGGCGATCGCCAATTTAC
CCAATGCCCTGCGCCTGGTGGAAAAACGGGGTTTAATTCAAGATTTGCCGGGTTACAAAGAAGGCTGGTGGACGATCCAG
GATGCCAGCGCCCAGTTGGTAACGCACTTACTCGATCCCCAACCAGGGGAAGTGATTATTGATGCCTGTGCAGCGCCCGG
CGGCAAAACGACCCACATCGCCGAAAAAATGCAGGATCGCGGCACCATCTGGGCCAGCGATAAATATCAAGCTCGCATTA
ATAAAATTGAGCAAAATGCCCGCCGCCTCAAACTCTCGATGATCCGCACCCTCATCGGTGACAGTCGCACCTATTCGCAG
TTTCGCAATATGGCCGACCGGGTACTGCTGGATGTGCCCTGTTCGGGATTGGGGACACTCCACAAACGCCCCGATATCCG
TTGGCAACAGAACCCTCAAAAAATTGCGCAACTGACCCAACTCCAAGGAGAACTCCTCACCACGGGGGCCACTTGGGTCA
AACCGGGAGGCTATTTAGTCTATGCCACCTGTACCCTCAATCCGGCAGAAAATGAGGCGATCGCCAACCAATTTCTCGTG
GAACACCCAGACTGGCAGATTGTCCCCCCCAGCCCAGATTTACCCGCTTTTCCCTACGCCCAGGAACAGGGTTGGATTCA
GGTCTTACCCCAGCGCCACGACATGGATGGTTTCTTTATGGTGAAGTTGCAACGGCCTGCCTAG

Upstream 100 bases:

>100_bases
AAATTAACCTGACCATTGCACCACTGTTGATAAAATTTATGGCGACTAGCATAGGTCAGCAATGGGGGATAATCAACCTA
CTACGTTTTTATCGGATTTA

Downstream 100 bases:

>100_bases
AGGGATTGGGCGATCGCCTCGGTGAGGGTTTGCAGGGATTCAGAAATGCTGACAGGATAAACTTCGGGCTGGGTCAAGCG
TTTCACCCTGTCGGGAAGCT

Product: ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase)

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 447; Mature: 446

Protein sequence:

>447_residues
MSSARQLAFLALRQIMYHNAYTDVALDRVLHKSNLTGSDRALVAELVYGTVRRQKTLDAIIDQLGKKPIDQQPPDLRVLL
QLGLYQLRYLDQIPPSAAVNTSVEIAKTNKLGQLAGVVNGCLRGYLRQRDKGHDPLQLPEAAAERLALQYSFPEWLIGQW
LEQFGAEETEQLCQWFNRPAQLDLRVNPLRANVAAVQDKLNQAGVKAEAIANLPNALRLVEKRGLIQDLPGYKEGWWTIQ
DASAQLVTHLLDPQPGEVIIDACAAPGGKTTHIAEKMQDRGTIWASDKYQARINKIEQNARRLKLSMIRTLIGDSRTYSQ
FRNMADRVLLDVPCSGLGTLHKRPDIRWQQNPQKIAQLTQLQGELLTTGATWVKPGGYLVYATCTLNPAENEAIANQFLV
EHPDWQIVPPSPDLPAFPYAQEQGWIQVLPQRHDMDGFFMVKLQRPA

Sequences:

>Translated_447_residues
MSSARQLAFLALRQIMYHNAYTDVALDRVLHKSNLTGSDRALVAELVYGTVRRQKTLDAIIDQLGKKPIDQQPPDLRVLL
QLGLYQLRYLDQIPPSAAVNTSVEIAKTNKLGQLAGVVNGCLRGYLRQRDKGHDPLQLPEAAAERLALQYSFPEWLIGQW
LEQFGAEETEQLCQWFNRPAQLDLRVNPLRANVAAVQDKLNQAGVKAEAIANLPNALRLVEKRGLIQDLPGYKEGWWTIQ
DASAQLVTHLLDPQPGEVIIDACAAPGGKTTHIAEKMQDRGTIWASDKYQARINKIEQNARRLKLSMIRTLIGDSRTYSQ
FRNMADRVLLDVPCSGLGTLHKRPDIRWQQNPQKIAQLTQLQGELLTTGATWVKPGGYLVYATCTLNPAENEAIANQFLV
EHPDWQIVPPSPDLPAFPYAQEQGWIQVLPQRHDMDGFFMVKLQRPA
>Mature_446_residues
SSARQLAFLALRQIMYHNAYTDVALDRVLHKSNLTGSDRALVAELVYGTVRRQKTLDAIIDQLGKKPIDQQPPDLRVLLQ
LGLYQLRYLDQIPPSAAVNTSVEIAKTNKLGQLAGVVNGCLRGYLRQRDKGHDPLQLPEAAAERLALQYSFPEWLIGQWL
EQFGAEETEQLCQWFNRPAQLDLRVNPLRANVAAVQDKLNQAGVKAEAIANLPNALRLVEKRGLIQDLPGYKEGWWTIQD
ASAQLVTHLLDPQPGEVIIDACAAPGGKTTHIAEKMQDRGTIWASDKYQARINKIEQNARRLKLSMIRTLIGDSRTYSQF
RNMADRVLLDVPCSGLGTLHKRPDIRWQQNPQKIAQLTQLQGELLTTGATWVKPGGYLVYATCTLNPAENEAIANQFLVE
HPDWQIVPPSPDLPAFPYAQEQGWIQVLPQRHDMDGFFMVKLQRPA

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=367, Percent_Identity=28.3378746594005, Blast_Score=152, Evalue=6e-37,
Organism=Homo sapiens, GI76150623, Length=367, Percent_Identity=28.3378746594005, Blast_Score=152, Evalue=6e-37,
Organism=Homo sapiens, GI32698918, Length=226, Percent_Identity=35.8407079646018, Blast_Score=135, Evalue=8e-32,
Organism=Homo sapiens, GI8922322, Length=320, Percent_Identity=26.875, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI270288818, Length=319, Percent_Identity=26.6457680250784, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI270288816, Length=320, Percent_Identity=26.875, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI23199998, Length=319, Percent_Identity=26.6457680250784, Blast_Score=90, Evalue=5e-18,
Organism=Homo sapiens, GI39995082, Length=176, Percent_Identity=32.9545454545455, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI301336155, Length=176, Percent_Identity=32.9545454545455, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI40316918, Length=210, Percent_Identity=30, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI11545785, Length=246, Percent_Identity=28.4552845528455, Blast_Score=70, Evalue=3e-12,
Organism=Escherichia coli, GI2367212, Length=414, Percent_Identity=35.2657004830918, Blast_Score=215, Evalue=4e-57,
Organism=Escherichia coli, GI87081985, Length=218, Percent_Identity=35.3211009174312, Blast_Score=129, Evalue=5e-31,
Organism=Caenorhabditis elegans, GI17536757, Length=405, Percent_Identity=26.6666666666667, Blast_Score=141, Evalue=6e-34,
Organism=Caenorhabditis elegans, GI25143471, Length=206, Percent_Identity=31.5533980582524, Blast_Score=92, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI71998419, Length=239, Percent_Identity=25.9414225941423, Blast_Score=88, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI115534021, Length=239, Percent_Identity=26.7782426778243, Blast_Score=87, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6324268, Length=310, Percent_Identity=26.4516129032258, Blast_Score=126, Evalue=7e-30,
Organism=Saccharomyces cerevisiae, GI6319447, Length=176, Percent_Identity=30.6818181818182, Blast_Score=86, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6324306, Length=272, Percent_Identity=24.6323529411765, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI22024126, Length=317, Percent_Identity=29.3375394321767, Blast_Score=129, Evalue=5e-30,
Organism=Drosophila melanogaster, GI21356513, Length=274, Percent_Identity=29.9270072992701, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24668781, Length=274, Percent_Identity=29.9270072992701, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI21355201, Length=183, Percent_Identity=31.6939890710383, Blast_Score=94, Evalue=3e-19,
Organism=Drosophila melanogaster, GI21356579, Length=174, Percent_Identity=25.8620689655172, Blast_Score=80, Evalue=4e-15,
Organism=Drosophila melanogaster, GI19920494, Length=181, Percent_Identity=28.1767955801105, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 50221; Mature: 50090

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSARQLAFLALRQIMYHNAYTDVALDRVLHKSNLTGSDRALVAELVYGTVRRQKTLDAI
CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
IDQLGKKPIDQQPPDLRVLLQLGLYQLRYLDQIPPSAAVNTSVEIAKTNKLGQLAGVVNG
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHH
CLRGYLRQRDKGHDPLQLPEAAAERLALQYSFPEWLIGQWLEQFGAEETEQLCQWFNRPA
HHHHHHHHHCCCCCCCCCHHHHHHHHEEECCCHHHHHHHHHHHHCCHHHHHHHHHHCCCC
QLDLRVNPLRANVAAVQDKLNQAGVKAEAIANLPNALRLVEKRGLIQDLPGYKEGWWTIQ
EEEEEECCHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHCCCHHHCCCCCCCCEEEE
DASAQLVTHLLDPQPGEVIIDACAAPGGKTTHIAEKMQDRGTIWASDKYQARINKIEQNA
CHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEECCHHHHHHHHHHHHH
RRLKLSMIRTLIGDSRTYSQFRNMADRVLLDVPCSGLGTLHKRPDIRWQQNPQKIAQLTQ
HHHHHHHHHHHHCCCHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH
LQGELLTTGATWVKPGGYLVYATCTLNPAENEAIANQFLVEHPDWQIVPPSPDLPAFPYA
HCCHHEECCCCEECCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCC
QEQGWIQVLPQRHDMDGFFMVKLQRPA
CCCCCEEECCCCCCCCCEEEEEEECCC
>Mature Secondary Structure 
SSARQLAFLALRQIMYHNAYTDVALDRVLHKSNLTGSDRALVAELVYGTVRRQKTLDAI
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
IDQLGKKPIDQQPPDLRVLLQLGLYQLRYLDQIPPSAAVNTSVEIAKTNKLGQLAGVVNG
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHH
CLRGYLRQRDKGHDPLQLPEAAAERLALQYSFPEWLIGQWLEQFGAEETEQLCQWFNRPA
HHHHHHHHHCCCCCCCCCHHHHHHHHEEECCCHHHHHHHHHHHHCCHHHHHHHHHHCCCC
QLDLRVNPLRANVAAVQDKLNQAGVKAEAIANLPNALRLVEKRGLIQDLPGYKEGWWTIQ
EEEEEECCHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHCCCHHHCCCCCCCCEEEE
DASAQLVTHLLDPQPGEVIIDACAAPGGKTTHIAEKMQDRGTIWASDKYQARINKIEQNA
CHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEECCHHHHHHHHHHHHH
RRLKLSMIRTLIGDSRTYSQFRNMADRVLLDVPCSGLGTLHKRPDIRWQQNPQKIAQLTQ
HHHHHHHHHHHHCCCHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH
LQGELLTTGATWVKPGGYLVYATCTLNPAENEAIANQFLVEHPDWQIVPPSPDLPAFPYA
HCCHHEECCCCEECCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCC
QEQGWIQVLPQRHDMDGFFMVKLQRPA
CCCCCEEECCCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]