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The map label for this gene is radC [C]

Identifier: 170076851

GI number: 170076851

Start: 231257

End: 231988

Strand: Direct

Name: radC [C]

Synonym: SYNPCC7002_A0220

Alternate gene names: 170076851

Gene position: 231257-231988 (Clockwise)

Preceding gene: 170076850

Following gene: 170076852

Centisome position: 7.69

GC content: 54.23

Gene sequence:

>732_bases
ATGAACTACAGCCCCCGGATCCAAGATATTCCCGCTAGCGAACGACCGCGCGAACGCCTGGTGGCAGTGGGGGCCAAATA
TTTATCCAATGCCGAATTAATTGCCATCTTGATCAGCACTGGCGATCGCCACCGCAACCTTTCCGCCGTCGGCCTTGCCC
AATTTATTTTGCAAACCTGCAGCCAGGGTAAGCGGGATCCCTTTGATATGTTGCGTCACACGACCCCCCAAGAACTGACT
AGCATCCCCGGAGTGGGCCTTGCCAAAGCCGCCCAGATCCTCGCCGGGATCGAACTCGGCAAACGAATTTTCCAAGCGAA
ACCCAGCGAAAAAATCATCGTTGATAGTCCCGAAGCAGCGGCGATCGCCCTCAGCAACGATCTCATGTGGCAAGACCAAG
AACGCTTTGCCGTCCTCTGCCTCGATGTGAAAAATACCCTGATCGCCACGAGGGTTGTCACCATTGGTTTGGCCACCGAA
ACCCTAGCCCACCCCAGGGAAATTTTCCGCGAAGTCATCAAACATGGAGCCACCCGCTTGATCATCGCCCACAATCATCC
TTCTGGTAATGTCGATCCCAGCCCCGAAGATTTACAACTCACCGAACGCTTACTACAATCTGCCCAAATTCTCGGCATTC
CCCTCCTTGATCACCTGATCCTTGGCCGCGATAACTTCGGCAGCCTACGCCAAAAAACAGCCCTCTGGGACTCTTACCCC
CAACCAGAATAA

Upstream 100 bases:

>100_bases
AAATTAACCTCCAAGCAGGCGATCGCATCGAGGTCACCAAGACCAACGAATAATGAAATCCCCATCGTCAAGTTGTGTGC
ATTGATCTGTTAAGAACTAG

Downstream 100 bases:

>100_bases
GAAATATTTTCGATAAACTTTTCCAATAAAAATTGTTTCAACTCAAAACAATAATGTATGGAATCTGTCGACTTTATAGG
TCTTTTGGTGACATTTATTT

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MNYSPRIQDIPASERPRERLVAVGAKYLSNAELIAILISTGDRHRNLSAVGLAQFILQTCSQGKRDPFDMLRHTTPQELT
SIPGVGLAKAAQILAGIELGKRIFQAKPSEKIIVDSPEAAAIALSNDLMWQDQERFAVLCLDVKNTLIATRVVTIGLATE
TLAHPREIFREVIKHGATRLIIAHNHPSGNVDPSPEDLQLTERLLQSAQILGIPLLDHLILGRDNFGSLRQKTALWDSYP
QPE

Sequences:

>Translated_243_residues
MNYSPRIQDIPASERPRERLVAVGAKYLSNAELIAILISTGDRHRNLSAVGLAQFILQTCSQGKRDPFDMLRHTTPQELT
SIPGVGLAKAAQILAGIELGKRIFQAKPSEKIIVDSPEAAAIALSNDLMWQDQERFAVLCLDVKNTLIATRVVTIGLATE
TLAHPREIFREVIKHGATRLIIAHNHPSGNVDPSPEDLQLTERLLQSAQILGIPLLDHLILGRDNFGSLRQKTALWDSYP
QPE
>Mature_243_residues
MNYSPRIQDIPASERPRERLVAVGAKYLSNAELIAILISTGDRHRNLSAVGLAQFILQTCSQGKRDPFDMLRHTTPQELT
SIPGVGLAKAAQILAGIELGKRIFQAKPSEKIIVDSPEAAAIALSNDLMWQDQERFAVLCLDVKNTLIATRVVTIGLATE
TLAHPREIFREVIKHGATRLIIAHNHPSGNVDPSPEDLQLTERLLQSAQILGIPLLDHLILGRDNFGSLRQKTALWDSYP
QPE

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=217, Percent_Identity=32.7188940092166, Blast_Score=127, Evalue=6e-31,
Organism=Escherichia coli, GI1788312, Length=124, Percent_Identity=36.2903225806452, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI2367100, Length=91, Percent_Identity=43.956043956044, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788997, Length=111, Percent_Identity=36.9369369369369, Blast_Score=78, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y220_SYNP2 (B1XM86)

Other databases:

- EMBL:   CP000951
- RefSeq:   YP_001733489.1
- ProteinModelPortal:   B1XM86
- SMR:   B1XM86
- GeneID:   6057475
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A0220
- HOGENOM:   HBG751042
- OMA:   LDHLILG
- ProtClustDB:   PRK00024
- InterPro:   IPR003583
- InterPro:   IPR001405
- InterPro:   IPR020891
- SMART:   SM00278
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466

EC number: NA

Molecular weight: Translated: 26812; Mature: 26812

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYSPRIQDIPASERPRERLVAVGAKYLSNAELIAILISTGDRHRNLSAVGLAQFILQTC
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHH
SQGKRDPFDMLRHTTPQELTSIPGVGLAKAAQILAGIELGKRIFQAKPSEKIIVDSPEAA
CCCCCCHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCE
AIALSNDLMWQDQERFAVLCLDVKNTLIATRVVTIGLATETLAHPREIFREVIKHGATRL
EEEECCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEE
IIAHNHPSGNVDPSPEDLQLTERLLQSAQILGIPLLDHLILGRDNFGSLRQKTALWDSYP
EEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCCC
QPE
CCC
>Mature Secondary Structure
MNYSPRIQDIPASERPRERLVAVGAKYLSNAELIAILISTGDRHRNLSAVGLAQFILQTC
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHH
SQGKRDPFDMLRHTTPQELTSIPGVGLAKAAQILAGIELGKRIFQAKPSEKIIVDSPEAA
CCCCCCHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCE
AIALSNDLMWQDQERFAVLCLDVKNTLIATRVVTIGLATETLAHPREIFREVIKHGATRL
EEEECCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEE
IIAHNHPSGNVDPSPEDLQLTERLLQSAQILGIPLLDHLILGRDNFGSLRQKTALWDSYP
EEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCCC
QPE
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA