| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is hoxH [H]
Identifier: 170076831
GI number: 170076831
Start: 210491
End: 211915
Strand: Direct
Name: hoxH [H]
Synonym: SYNPCC7002_A0200
Alternate gene names: 170076831
Gene position: 210491-211915 (Clockwise)
Preceding gene: 170076830
Following gene: 170076832
Centisome position: 7.0
GC content: 43.02
Gene sequence:
>1425_bases ATGTCTAAAACAATCATTATTGATCCCATGACTCGCATCGAAGGACATGCCAAAATTTCCATTTATCTAGATGATCAAGG AGAAGTGCATGAAGCACGTTTTCATGTCGGGGAATTTCGGGGGTTTGAGAAATTTTGTGAAGGTCGTCCTTTCTGGGAAA TGCCTGCCTTAACGTCCCGAATCTGTGGTATTTGTCCCGTCAGTCATCTAATTGCATCCTCAAAAACAGGCGATCAATTA TTAGCTGTAAAGATTCCTGTTGGGGCAGGAAAATTACGGCGAATGATTAATCTTGCCCAGATCACTCAATCCCATGCCCT CAGTTTTTTCCACCTTAGTAGTCCTGATTTAATCTTTGGTTGGGACAGTGATCCGAAGACGAGAAATGTATTTGGTTTAA TTGCCGCTGATCCTGATTTAGCACGGGGTGGAATTCGTCTGAGAAAATTTGGACAGGACATTATTAAAATCCTTGGGAGC CAAAAAGTTCACCCCGCTTGGTCAATCCCCGGTGGCGTGCGATCGCCGTTAACAAAAGAAGGACAAACTTATATTAAAGA GGGTTTGCCGGAAGCAAAAAATACCGTTAAAAATGCCCTGAGTTTATTTAAAAAAATTCTTGACTCCCATCAGGAAGAAG TGACAGTTTTCGGTAATTTTCCGAGTCTTTATCTGGGTTTAATAGGCGAGTCCGGCGCATGGGAACATTATGGCGGCATT TTGCGGATGATCGATAGCCACGGCAATATTGTGGGCGATCGCCTTGATCCGAACAATTACCATGAATTTCTGGGGGAAAA ATTACAGGAAGATTCCTACTTAAAATCCCCTTACTATAAGCTTTTTGGGGAGACAGGGGTATATCGCGTCGGGCCTTTAG CACGGTTAAATATTTGCGAACATTTTGGCACCGAAGCCGCCGATCAAGAACTCATTGAATATCGGCAACGACACGGCAGA ATTGTCCAAGCTTCCTTTGTTTATCACCACGCGAGACTCATTGAAATATTAGGTTCCCTCGAAAGAATTGAGCGGATGAT CGATGATCCAGATCTTTTTTCTAACCGTTTGCAAGCAGAGGCAGGGGTTAATCAAACCGAAGCCGTTGGCGTGAGTGAGG CACCACGAGGAACCCTTTTTCATCATTATCAAGTGGATGAAAATGGACTGCTCAAAAAGATAAATTTAGTGATTGCGACA GGACAAAATAACTTTGCTATTAACCGCACCGTGACCCAAATTGCCAAGCATTATATTCATGGTGAAACTGTTGCAGAAGG CATTTTAAATCGAGTGGAGGCTGGGGTGAGAAATTATGATCCTTGTTTAAGTTGTTCGACCCATGCCGCCGGACAAATGC CGATGATTTTACAATTAATTTCCCCTGATGGTTCCATTGTCAAAGAAATTCGTCGTGATAGTTAA
Upstream 100 bases:
>100_bases TAATTGGTGTAGTGGTTAACAGTCATAATTCGTTAAAATAAAAACTATTTTAATCAACACATTTTTAGCGTTCGTTTGAA AAATCATCTAGGAGTAAAAA
Downstream 100 bases:
>100_bases TGAAACAAACTTTAATGATTGGTTACGGCAATACATTACGTTCTGATGATGGGGCAGGACAAAAGGTTGCGGAAGCTTTT TTTGATCAGGAAAATATAAC
Product: hydrogenase large subunit H
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 474; Mature: 473
Protein sequence:
>474_residues MSKTIIIDPMTRIEGHAKISIYLDDQGEVHEARFHVGEFRGFEKFCEGRPFWEMPALTSRICGICPVSHLIASSKTGDQL LAVKIPVGAGKLRRMINLAQITQSHALSFFHLSSPDLIFGWDSDPKTRNVFGLIAADPDLARGGIRLRKFGQDIIKILGS QKVHPAWSIPGGVRSPLTKEGQTYIKEGLPEAKNTVKNALSLFKKILDSHQEEVTVFGNFPSLYLGLIGESGAWEHYGGI LRMIDSHGNIVGDRLDPNNYHEFLGEKLQEDSYLKSPYYKLFGETGVYRVGPLARLNICEHFGTEAADQELIEYRQRHGR IVQASFVYHHARLIEILGSLERIERMIDDPDLFSNRLQAEAGVNQTEAVGVSEAPRGTLFHHYQVDENGLLKKINLVIAT GQNNFAINRTVTQIAKHYIHGETVAEGILNRVEAGVRNYDPCLSCSTHAAGQMPMILQLISPDGSIVKEIRRDS
Sequences:
>Translated_474_residues MSKTIIIDPMTRIEGHAKISIYLDDQGEVHEARFHVGEFRGFEKFCEGRPFWEMPALTSRICGICPVSHLIASSKTGDQL LAVKIPVGAGKLRRMINLAQITQSHALSFFHLSSPDLIFGWDSDPKTRNVFGLIAADPDLARGGIRLRKFGQDIIKILGS QKVHPAWSIPGGVRSPLTKEGQTYIKEGLPEAKNTVKNALSLFKKILDSHQEEVTVFGNFPSLYLGLIGESGAWEHYGGI LRMIDSHGNIVGDRLDPNNYHEFLGEKLQEDSYLKSPYYKLFGETGVYRVGPLARLNICEHFGTEAADQELIEYRQRHGR IVQASFVYHHARLIEILGSLERIERMIDDPDLFSNRLQAEAGVNQTEAVGVSEAPRGTLFHHYQVDENGLLKKINLVIAT GQNNFAINRTVTQIAKHYIHGETVAEGILNRVEAGVRNYDPCLSCSTHAAGQMPMILQLISPDGSIVKEIRRDS >Mature_473_residues SKTIIIDPMTRIEGHAKISIYLDDQGEVHEARFHVGEFRGFEKFCEGRPFWEMPALTSRICGICPVSHLIASSKTGDQLL AVKIPVGAGKLRRMINLAQITQSHALSFFHLSSPDLIFGWDSDPKTRNVFGLIAADPDLARGGIRLRKFGQDIIKILGSQ KVHPAWSIPGGVRSPLTKEGQTYIKEGLPEAKNTVKNALSLFKKILDSHQEEVTVFGNFPSLYLGLIGESGAWEHYGGIL RMIDSHGNIVGDRLDPNNYHEFLGEKLQEDSYLKSPYYKLFGETGVYRVGPLARLNICEHFGTEAADQELIEYRQRHGRI VQASFVYHHARLIEILGSLERIERMIDDPDLFSNRLQAEAGVNQTEAVGVSEAPRGTLFHHYQVDENGLLKKINLVIATG QNNFAINRTVTQIAKHYIHGETVAEGILNRVEAGVRNYDPCLSCSTHAAGQMPMILQLISPDGSIVKEIRRDS
Specific function: This Is One Of Three E.Coli Hydrogenases Synthesized In Response To Different Physiological Conditions. Hyd2 Is Involved In Hydrogen Uptake. [C]
COG id: COG3259
COG function: function code C; Coenzyme F420-reducing hydrogenase, alpha subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family [H]
Homologues:
Organism=Escherichia coli, GI1789368, Length=118, Percent_Identity=33.8983050847458, Blast_Score=80, Evalue=4e-16, Organism=Escherichia coli, GI1787207, Length=157, Percent_Identity=29.2993630573248, Blast_Score=72, Evalue=6e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001501 - InterPro: IPR018194 [H]
Pfam domain/function: PF00374 NiFeSe_Hases [H]
EC number: =1.12.1.2 [H]
Molecular weight: Translated: 52872; Mature: 52741
Theoretical pI: Translated: 7.07; Mature: 7.07
Prosite motif: PS00507 NI_HGENASE_L_1 ; PS00508 NI_HGENASE_L_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKTIIIDPMTRIEGHAKISIYLDDQGEVHEARFHVGEFRGFEKFCEGRPFWEMPALTSR CCCCEEECCHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHH ICGICPVSHLIASSKTGDQLLAVKIPVGAGKLRRMINLAQITQSHALSFFHLSSPDLIFG HHHHCHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCEEEEEECCCCEEEE WDSDPKTRNVFGLIAADPDLARGGIRLRKFGQDIIKILGSQKVHPAWSIPGGVRSPLTKE CCCCCCCCCEEEEEECCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC GQTYIKEGLPEAKNTVKNALSLFKKILDSHQEEVTVFGNFPSLYLGLIGESGAWEHYGGI CHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCCCCCCHHHHHH LRMIDSHGNIVGDRLDPNNYHEFLGEKLQEDSYLKSPYYKLFGETGVYRVGPLARLNICE HHHHHCCCCEECCCCCCCHHHHHHHHHHCCCCHHCCCHHHHHCCCCCEECCCHHHHHHHH HFGTEAADQELIEYRQRHGRIVQASFVYHHARLIEILGSLERIERMIDDPDLFSNRLQAE HHCCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH AGVNQTEAVGVSEAPRGTLFHHYQVDENGLLKKINLVIATGQNNFAINRTVTQIAKHYIH CCCCHHHCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCEEEHHHHHHHHHHHHC GETVAEGILNRVEAGVRNYDPCLSCSTHAAGQMPMILQLISPDGSIVKEIRRDS HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHCCC >Mature Secondary Structure SKTIIIDPMTRIEGHAKISIYLDDQGEVHEARFHVGEFRGFEKFCEGRPFWEMPALTSR CCCEEECCHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHH ICGICPVSHLIASSKTGDQLLAVKIPVGAGKLRRMINLAQITQSHALSFFHLSSPDLIFG HHHHCHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCEEEEEECCCCEEEE WDSDPKTRNVFGLIAADPDLARGGIRLRKFGQDIIKILGSQKVHPAWSIPGGVRSPLTKE CCCCCCCCCEEEEEECCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC GQTYIKEGLPEAKNTVKNALSLFKKILDSHQEEVTVFGNFPSLYLGLIGESGAWEHYGGI CHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCCCCCCHHHHHH LRMIDSHGNIVGDRLDPNNYHEFLGEKLQEDSYLKSPYYKLFGETGVYRVGPLARLNICE HHHHHCCCCEECCCCCCCHHHHHHHHHHCCCCHHCCCHHHHHCCCCCEECCCHHHHHHHH HFGTEAADQELIEYRQRHGRIVQASFVYHHARLIEILGSLERIERMIDDPDLFSNRLQAE HHCCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH AGVNQTEAVGVSEAPRGTLFHHYQVDENGLLKKINLVIATGQNNFAINRTVTQIAKHYIH CCCCHHHCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCEEEHHHHHHHHHHHHC GETVAEGILNRVEAGVRNYDPCLSCSTHAAGQMPMILQLISPDGSIVKEIRRDS HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2188945; 12948488; 2496982 [H]