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The map label for this gene is hoxY [H]

Identifier: 170076829

GI number: 170076829

Start: 209193

End: 209759

Strand: Direct

Name: hoxY [H]

Synonym: SYNPCC7002_A0198

Alternate gene names: 170076829

Gene position: 209193-209759 (Clockwise)

Preceding gene: 170076828

Following gene: 170076830

Centisome position: 6.95

GC content: 42.68

Gene sequence:

>567_bases
ATGGCGCAAGAAACCCAACAAAAAATTCGATTTGCAACAATTTGGTTGGCGGGTTGTTCCGGTTGCCACATGTCTTTTTT
AGACCTCGATGAATTTTTAATTGAGTTGATAAAATATGTGGATGTGGTCTTTAGTCCCGTCGGTTCCGATGTCAAAGATT
ACCCTAAAAATGTCGATGTTTGTCTCATTGAAGGGGCTGTTGCTAACCAAGAAAATTTGGAATTGTTAGAAAAAGTTCGC
CAAAATACAAAGCTATTAATTGCCTTTGGGGACTGTGCTGTAACGACCAATGTTACAGGAATTCGCAATCAAAAGGGAGA
TGCCCAAACCATTTTAGAACGAGGCTATAAAGAACTCACCGAAGAACACCGATTACCCCAACAAATTACCGGAGGAATTT
TGCCGCCTTTATTACCCAGAGTTTTGCCCATCCATGAAGTCGTTGATATCGATTTATTTCTCCCCGGTTGCCCCCCCGAT
GCCGACCGAATTAAAGCGGCGATCGCCCCCTTATTAGAAGGAAAATTGCCGGAAATGGAAGGACGAGAAATGATCAAATT
CGGCTAG

Upstream 100 bases:

>100_bases
CGATTTTCCGCAAGGGAGCCACCGTAGGCAGTAAACTCGGCGATCGCCAAAAACTTGAATTTTTAATTACCGCACGCACC
AAAGGAGAGTGGACAAGATA

Downstream 100 bases:

>100_bases
ATTTTATGTCCCAAACATTTGCCATGCTGACTGCCGCCGATATCATGAATCCCAATGTGGTGACGATCAAAGGTTTAGCG
ACCATTGCCAGTGCCACCCA

Product: hydrogenase small subunit Y

Products: NA

Alternate protein names: Methyl viologen-reducing hydrogenase subunit gamma; MVH subunit G [H]

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MAQETQQKIRFATIWLAGCSGCHMSFLDLDEFLIELIKYVDVVFSPVGSDVKDYPKNVDVCLIEGAVANQENLELLEKVR
QNTKLLIAFGDCAVTTNVTGIRNQKGDAQTILERGYKELTEEHRLPQQITGGILPPLLPRVLPIHEVVDIDLFLPGCPPD
ADRIKAAIAPLLEGKLPEMEGREMIKFG

Sequences:

>Translated_188_residues
MAQETQQKIRFATIWLAGCSGCHMSFLDLDEFLIELIKYVDVVFSPVGSDVKDYPKNVDVCLIEGAVANQENLELLEKVR
QNTKLLIAFGDCAVTTNVTGIRNQKGDAQTILERGYKELTEEHRLPQQITGGILPPLLPRVLPIHEVVDIDLFLPGCPPD
ADRIKAAIAPLLEGKLPEMEGREMIKFG
>Mature_187_residues
AQETQQKIRFATIWLAGCSGCHMSFLDLDEFLIELIKYVDVVFSPVGSDVKDYPKNVDVCLIEGAVANQENLELLEKVRQ
NTKLLIAFGDCAVTTNVTGIRNQKGDAQTILERGYKELTEEHRLPQQITGGILPPLLPRVLPIHEVVDIDLFLPGCPPDA
DRIKAAIAPLLEGKLPEMEGREMIKFG

Specific function: Part of a complex that provides reducing equivalents for heterodisulfide reductase [H]

COG id: COG1941

COG function: function code C; Coenzyme F420-reducing hydrogenase, gamma subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the [NiFe]/[NiFeSe] hydrogenase small subunit family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006137 [H]

Pfam domain/function: PF01058 Oxidored_q6 [H]

EC number: NA

Molecular weight: Translated: 20884; Mature: 20752

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQETQQKIRFATIWLAGCSGCHMSFLDLDEFLIELIKYVDVVFSPVGSDVKDYPKNVDV
CCCHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCE
CLIEGAVANQENLELLEKVRQNTKLLIAFGDCAVTTNVTGIRNQKGDAQTILERGYKELT
EEEECCCCCHHHHHHHHHHHCCCEEEEEECCEEEECCCCCCCCCCCHHHHHHHHHHHHHH
EEHRLPQQITGGILPPLLPRVLPIHEVVDIDLFLPGCPPDADRIKAAIAPLLEGKLPEME
HHHCCCHHHHCCCCHHHHHHHCCHHHHHEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCC
GREMIKFG
CCCCCCCC
>Mature Secondary Structure 
AQETQQKIRFATIWLAGCSGCHMSFLDLDEFLIELIKYVDVVFSPVGSDVKDYPKNVDV
CCHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCE
CLIEGAVANQENLELLEKVRQNTKLLIAFGDCAVTTNVTGIRNQKGDAQTILERGYKELT
EEEECCCCCHHHHHHHHHHHCCCEEEEEECCEEEECCCCCCCCCCCHHHHHHHHHHHHHH
EEHRLPQQITGGILPPLLPRVLPIHEVVDIDLFLPGCPPDADRIKAAIAPLLEGKLPEME
HHHCCCHHHHCCCCHHHHHHHCCHHHHHEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCC
GREMIKFG
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2654933; 9371463 [H]