| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170076748
Identifier: 170076748
GI number: 170076748
Start: 114276
End: 116504
Strand: Direct
Name: 170076748
Synonym: SYNPCC7002_A0115
Alternate gene names: NA
Gene position: 114276-116504 (Clockwise)
Preceding gene: 170076747
Following gene: 170076750
Centisome position: 3.8
GC content: 52.71
Gene sequence:
>2229_bases ATGTCTTATCCCCTCTACATCGCGTTTATTTGGCATCAGCATCAACCCCTCTACAAAGCACCGGACGGTCAATATCATCT CCCCTGGGTGCGGCTCCACGGCACTAAAGATTACCTAGATTTGATTTTGCTGCTCGAAAAATATCCACGCCTCCACCAAA CTGTGAATTTGGTACCTTCCTTGATGATGCAGTTGGAAGATTATGCCGAAGGCAAGGCTCTTGACCCCTATCTAAAGCTG GCCCTCACCCCCGTCACAGACCTCAACAGTGATCAAAAATGGTATATCCTGGAGCATTTCTTTGATGGCAACCACCGCAC CTTAGTCGATCCCCATCCCCGCTACCGGGAGCTGTACACCGAGCGCCAGGACAAAGGCAAAGCCTGGTGCCTAGAAAATT GGGACGAACAAAAATTTAGTGATCTCTTGGCTTGGCATAATTTAGCCTGGATTGATCCCCTCTTTTGGGATGACCCGGAG ATCGCTGCCTGGCTCGAAAAAGATCGCGGCTTTACTTTAGGCGATCGCCAGCGCATTTATTCCAAACAACGGGAAATTAT TAAGCGGATTATCCCCAAACACAAACAAATGCAGGACAACGGGCAACTGGAGGTGACCACCACCCCCTACACCCACCCGA TTTTGCCCCTGCTCGCAGATACCAATTCTGGCCGCGTCGCCGTCCCTAAGATGGAACTTCCCCAGGAGCGCTTCCAGTGG TCAGAGGATATTCCCCGCCACCTCAACCGCGCCAAGGAAATGTACCGGGAACGTTTTGGCCGGGAAGTACGAGGTCTGTG GCCATCGGAGCAATCTGTCAGCCCGGAAGTGCTTAACCCCATCGCCGCCGCTGGCTTTAAGTGGATCTGTTCCGACGAAG CGGTGTTGGGTTGGAGCCTGAAACATTTCTTCCATCGGGACGAAGTGGGCAATGTCTACGAACCGGAAAAAATGTATCGC CCCTATCGCCTCGAAACAGACCATGGGGATCTCGCCATTGTCTTCCGGGATCACCGTCTGTCGGATCTCGTCGGCTTCAC CTATAGTGGTATGGACTCAGAACAGGCCGCCTGCGATCTGGTCGGTCACCTAGAGGCGATCGCCCGGAGCTTGCGACACC ACCAAAAAGAAGGCCAAACCGCCCTCCAAGAACCACACCTCGTAACCATCGCCCTCGACGGTGAAAACTGCTGGGAATTC TACGAAAAAGACGGCATCCCTTTCCTAACTTCCCTCTACGAAAAACTGAGCGCCAATCGCCAACTCGAACTCGTCACGGT CTCCGAATTTATCGAGCAATTTCCCCCCACCGAAACCATTCCCAGCCACAAACTCCATAGTGGTTCCTGGGTTGATGGGA GCTTTACCACCTGGATTGGGGACCCTGCTAAAAATCGCGCCTGGGATATGCTCACCAAAGCCCGCCACCTGCTCGCCGCC CATCCTGAAGCGACAGAAATTACCAACCCCGAAGCCTGGGAATCCCTCTATGCGGCCGAAGGCTCAGACTGGTTTTGGTG GTTTGGGGAAGGTCACTCCTCTAACCAAGACGCCATGTTTGACCAACTCTTTCGGGAACACGTCGCTGGGATCTACAAAG CCCTAAACGAACCGATTCCGCCGGAAGTGCTCCAACCCATTGAAGACCACACCCGCCACCGGGAGCACCTCCCCGAAAGC TTTATTCACCCGATCATTGATGGTATCGGCGACGAACAGGATTGGGATAAAGCCGGTTGCATCGAAATTGGTGGTGCCCG GGGTACCATGCACCAAAGTAGCGCCCTACAACGACTCTTTTACGGTTGGGATCATCTTAATTTTTATTTGCGCTTTGACC TCAAGCGGGGCATCAAATGGGGCGAAGAACTTCCAGCAGAACTCCATCTCCTTTGGTTCTATCCAGGGGTAAACTGCGCC ATTAGCCCGGCTCCCATCGCCAGTATGCCCGACCAGGCTCCCCTAAATTATCTCTTCCGGCACCACATCGGCATTAATCT CTTAACCCAATCTATCTGGTTTGAAGAAGCCAGTGATTATGGCCAGTGGCGGCCCCGGGGTGCCCATGCCAAAATGGCTT ACCGAGAATGTTTAGAATTGTCTGTGCCGTGGGATGTACTGCAGATTAAACCGGACTATACGCTCAATTTAGTAGCAATT TTGGCCGATGATGGTGAGTACCATAGTTTTGTGCCAGAAAATCGCTTTGTTACCCTACAGGTGCCTTAA
Upstream 100 bases:
>100_bases TGCCCGGAAGAACGGAAAGGCGATCGCTATGATTTAAAGAGAAAGCCAAGCTTACCCAAGGCTTTTGGAGACTCCACAGC GGCAAAATATTTCCATTTAT
Downstream 100 bases:
>100_bases GCCATTTTCTCAGGATAAAACTTAGCTCGTCGATAACCGTTGCACCGCTGCTCCTCCCAATAAATTATCGGCTTCCTGGA GATACTGGAGAATGTGTTTG
Product: glycosy hydrolase family protein
Products: NA
Alternate protein names: Glycoside Hydrolase Family Protein; Amylopullulanase; Glycoside Hydrolase; Glycosy Hydrolase Family Protein; Pullulanase; Glycosyl Hydrolase Family; Family; Alpha-Amylase/Alpha-Mannosidase; Membrane Bound Alpha-Amylase; Alpha-Mannosidase; Amylopullulanase Related Protein; Pullulanase Glycoside Hydrolase Family; Alpha-Dextran Endo-1 6-Alpha-Glucosidase
Number of amino acids: Translated: 742; Mature: 741
Protein sequence:
>742_residues MSYPLYIAFIWHQHQPLYKAPDGQYHLPWVRLHGTKDYLDLILLLEKYPRLHQTVNLVPSLMMQLEDYAEGKALDPYLKL ALTPVTDLNSDQKWYILEHFFDGNHRTLVDPHPRYRELYTERQDKGKAWCLENWDEQKFSDLLAWHNLAWIDPLFWDDPE IAAWLEKDRGFTLGDRQRIYSKQREIIKRIIPKHKQMQDNGQLEVTTTPYTHPILPLLADTNSGRVAVPKMELPQERFQW SEDIPRHLNRAKEMYRERFGREVRGLWPSEQSVSPEVLNPIAAAGFKWICSDEAVLGWSLKHFFHRDEVGNVYEPEKMYR PYRLETDHGDLAIVFRDHRLSDLVGFTYSGMDSEQAACDLVGHLEAIARSLRHHQKEGQTALQEPHLVTIALDGENCWEF YEKDGIPFLTSLYEKLSANRQLELVTVSEFIEQFPPTETIPSHKLHSGSWVDGSFTTWIGDPAKNRAWDMLTKARHLLAA HPEATEITNPEAWESLYAAEGSDWFWWFGEGHSSNQDAMFDQLFREHVAGIYKALNEPIPPEVLQPIEDHTRHREHLPES FIHPIIDGIGDEQDWDKAGCIEIGGARGTMHQSSALQRLFYGWDHLNFYLRFDLKRGIKWGEELPAELHLLWFYPGVNCA ISPAPIASMPDQAPLNYLFRHHIGINLLTQSIWFEEASDYGQWRPRGAHAKMAYRECLELSVPWDVLQIKPDYTLNLVAI LADDGEYHSFVPENRFVTLQVP
Sequences:
>Translated_742_residues MSYPLYIAFIWHQHQPLYKAPDGQYHLPWVRLHGTKDYLDLILLLEKYPRLHQTVNLVPSLMMQLEDYAEGKALDPYLKL ALTPVTDLNSDQKWYILEHFFDGNHRTLVDPHPRYRELYTERQDKGKAWCLENWDEQKFSDLLAWHNLAWIDPLFWDDPE IAAWLEKDRGFTLGDRQRIYSKQREIIKRIIPKHKQMQDNGQLEVTTTPYTHPILPLLADTNSGRVAVPKMELPQERFQW SEDIPRHLNRAKEMYRERFGREVRGLWPSEQSVSPEVLNPIAAAGFKWICSDEAVLGWSLKHFFHRDEVGNVYEPEKMYR PYRLETDHGDLAIVFRDHRLSDLVGFTYSGMDSEQAACDLVGHLEAIARSLRHHQKEGQTALQEPHLVTIALDGENCWEF YEKDGIPFLTSLYEKLSANRQLELVTVSEFIEQFPPTETIPSHKLHSGSWVDGSFTTWIGDPAKNRAWDMLTKARHLLAA HPEATEITNPEAWESLYAAEGSDWFWWFGEGHSSNQDAMFDQLFREHVAGIYKALNEPIPPEVLQPIEDHTRHREHLPES FIHPIIDGIGDEQDWDKAGCIEIGGARGTMHQSSALQRLFYGWDHLNFYLRFDLKRGIKWGEELPAELHLLWFYPGVNCA ISPAPIASMPDQAPLNYLFRHHIGINLLTQSIWFEEASDYGQWRPRGAHAKMAYRECLELSVPWDVLQIKPDYTLNLVAI LADDGEYHSFVPENRFVTLQVP >Mature_741_residues SYPLYIAFIWHQHQPLYKAPDGQYHLPWVRLHGTKDYLDLILLLEKYPRLHQTVNLVPSLMMQLEDYAEGKALDPYLKLA LTPVTDLNSDQKWYILEHFFDGNHRTLVDPHPRYRELYTERQDKGKAWCLENWDEQKFSDLLAWHNLAWIDPLFWDDPEI AAWLEKDRGFTLGDRQRIYSKQREIIKRIIPKHKQMQDNGQLEVTTTPYTHPILPLLADTNSGRVAVPKMELPQERFQWS EDIPRHLNRAKEMYRERFGREVRGLWPSEQSVSPEVLNPIAAAGFKWICSDEAVLGWSLKHFFHRDEVGNVYEPEKMYRP YRLETDHGDLAIVFRDHRLSDLVGFTYSGMDSEQAACDLVGHLEAIARSLRHHQKEGQTALQEPHLVTIALDGENCWEFY EKDGIPFLTSLYEKLSANRQLELVTVSEFIEQFPPTETIPSHKLHSGSWVDGSFTTWIGDPAKNRAWDMLTKARHLLAAH PEATEITNPEAWESLYAAEGSDWFWWFGEGHSSNQDAMFDQLFREHVAGIYKALNEPIPPEVLQPIEDHTRHREHLPESF IHPIIDGIGDEQDWDKAGCIEIGGARGTMHQSSALQRLFYGWDHLNFYLRFDLKRGIKWGEELPAELHLLWFYPGVNCAI SPAPIASMPDQAPLNYLFRHHIGINLLTQSIWFEEASDYGQWRPRGAHAKMAYRECLELSVPWDVLQIKPDYTLNLVAIL ADDGEYHSFVPENRFVTLQVP
Specific function: Unknown
COG id: COG1449
COG function: function code G; Alpha-amylase/alpha-mannosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 86421; Mature: 86290
Theoretical pI: Translated: 5.51; Mature: 5.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYPLYIAFIWHQHQPLYKAPDGQYHLPWVRLHGTKDYLDLILLLEKYPRLHQTVNLVPS CCCCEEEEEEEECCCCCCCCCCCCEECCEEEECCCHHHHHHHHHHHHCHHHHHHHHHHHH LMMQLEDYAEGKALDPYLKLALTPVTDLNSDQKWYILEHFFDGNHRTLVDPHPRYRELYT HHHHHHHHCCCCCCCHHHHEEECCCCCCCCCCCEEEEEEEECCCCCEECCCCHHHHHHHH ERQDKGKAWCLENWDEQKFSDLLAWHNLAWIDPLFWDDPEIAAWLEKDRGFTLGDRQRIY HHHCCCCEECCCCCCHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHCCCCCCCHHHHHH SKQREIIKRIIPKHKQMQDNGQLEVTTTPYTHPILPLLADTNSGRVAVPKMELPQERFQW HHHHHHHHHHCCHHHCCCCCCCEEEEECCCCCCCCCEEECCCCCEEEECCCCCCHHHHCC SEDIPRHLNRAKEMYRERFGREVRGLWPSEQSVSPEVLNPIAAAGFKWICSDEAVLGWSL HHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHCCEEEEECCCCHHHHHH KHFFHRDEVGNVYEPEKMYRPYRLETDHGDLAIVFRDHRLSDLVGFTYSGMDSEQAACDL HHHHHHCCCCCCCCHHHHCCCEEEECCCCCEEEEEECCCHHHHHCCEECCCCCHHHHHHH VGHLEAIARSLRHHQKEGQTALQEPHLVTIALDGENCWEFYEKDGIPFLTSLYEKLSANR HHHHHHHHHHHHHHHHHCHHHHCCCCEEEEEECCCHHHHHHHCCCCHHHHHHHHHHCCCC QLELVTVSEFIEQFPPTETIPSHKLHSGSWVDGSFTTWIGDPAKNRAWDMLTKARHLLAA EEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHC HPEATEITNPEAWESLYAAEGSDWFWWFGEGHSSNQDAMFDQLFREHVAGIYKALNEPIP CCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC PEVLQPIEDHTRHREHLPESFIHPIIDGIGDEQDWDKAGCIEIGGARGTMHQSSALQRLF HHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHH YGWDHLNFYLRFDLKRGIKWGEELPAELHLLWFYPGVNCAISPAPIASMPDQAPLNYLFR HHHHHEEEEEEEEEHHCCCCCCCCCCEEEEEEEECCCCCEECCCCCCCCCCCCHHHHHHH HHIGINLLTQSIWFEEASDYGQWRPRGAHAKMAYRECLELSVPWDVLQIKPDYTLNLVAI HHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEE LADDGEYHSFVPENRFVTLQVP EECCCCCCCCCCCCCEEEEECC >Mature Secondary Structure SYPLYIAFIWHQHQPLYKAPDGQYHLPWVRLHGTKDYLDLILLLEKYPRLHQTVNLVPS CCCEEEEEEEECCCCCCCCCCCCEECCEEEECCCHHHHHHHHHHHHCHHHHHHHHHHHH LMMQLEDYAEGKALDPYLKLALTPVTDLNSDQKWYILEHFFDGNHRTLVDPHPRYRELYT HHHHHHHHCCCCCCCHHHHEEECCCCCCCCCCCEEEEEEEECCCCCEECCCCHHHHHHHH ERQDKGKAWCLENWDEQKFSDLLAWHNLAWIDPLFWDDPEIAAWLEKDRGFTLGDRQRIY HHHCCCCEECCCCCCHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHCCCCCCCHHHHHH SKQREIIKRIIPKHKQMQDNGQLEVTTTPYTHPILPLLADTNSGRVAVPKMELPQERFQW HHHHHHHHHHCCHHHCCCCCCCEEEEECCCCCCCCCEEECCCCCEEEECCCCCCHHHHCC SEDIPRHLNRAKEMYRERFGREVRGLWPSEQSVSPEVLNPIAAAGFKWICSDEAVLGWSL HHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHCCEEEEECCCCHHHHHH KHFFHRDEVGNVYEPEKMYRPYRLETDHGDLAIVFRDHRLSDLVGFTYSGMDSEQAACDL HHHHHHCCCCCCCCHHHHCCCEEEECCCCCEEEEEECCCHHHHHCCEECCCCCHHHHHHH VGHLEAIARSLRHHQKEGQTALQEPHLVTIALDGENCWEFYEKDGIPFLTSLYEKLSANR HHHHHHHHHHHHHHHHHCHHHHCCCCEEEEEECCCHHHHHHHCCCCHHHHHHHHHHCCCC QLELVTVSEFIEQFPPTETIPSHKLHSGSWVDGSFTTWIGDPAKNRAWDMLTKARHLLAA EEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHC HPEATEITNPEAWESLYAAEGSDWFWWFGEGHSSNQDAMFDQLFREHVAGIYKALNEPIP CCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC PEVLQPIEDHTRHREHLPESFIHPIIDGIGDEQDWDKAGCIEIGGARGTMHQSSALQRLF HHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHH YGWDHLNFYLRFDLKRGIKWGEELPAELHLLWFYPGVNCAISPAPIASMPDQAPLNYLFR HHHHHEEEEEEEEEHHCCCCCCCCCCEEEEEEEECCCCCEECCCCCCCCCCCCHHHHHHH HHIGINLLTQSIWFEEASDYGQWRPRGAHAKMAYRECLELSVPWDVLQIKPDYTLNLVAI HHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEE LADDGEYHSFVPENRFVTLQVP EECCCCCCCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA