Click here to switch to the map view.

The map label for this gene is ydiU [C]

Identifier: 170076701

GI number: 170076701

Start: 72686

End: 74116

Strand: Direct

Name: ydiU [C]

Synonym: SYNPCC7002_A0066

Alternate gene names: 170076701

Gene position: 72686-74116 (Clockwise)

Preceding gene: 170076699

Following gene: 170076702

Centisome position: 2.42

GC content: 51.29

Gene sequence:

>1431_bases
ATGGCCCCCATCAGTGAGCTCACTCAAAATCCCCTCGTTTGTCTGCCCTACGAACAGGTCTTTGCAAGCCTAGGCGATCG
CTTTTCTGATGAAGTGACAGCGGCAGATTTTCCTCACCATGAGCTACGCTTCCGCAATGACGCCGTTTTAGAAAAATTGG
GCCTTGAACCGAAACAAGTAGACGATCAAGATTTTCTCGAAGCGTTTGGTCAGTTCCAAGCGCCCCATCCCTTGCGGGCC
ATGTGTTACCACGGCTATCAATTCGGTCAGTACAATCCTCAGTTAGGGGACGGACGGGGTTTTCTCTACGGGCAGGTGCG
CGCCCAGGATGGCTTACTCTACGATCTCGGTACGAAAGGTTCTGGGCAAACTCCCTATTCCCGCAATGGTGATGGGCGTT
TAACCCTTAAGGGCGGCGTTCGGGAAGTTTTGGCGGCAGAAGCATTGCATCAACTGGGGGTAAATACCTCCCGCTGTCTA
AGCTTGATCGAAACGGGGGAATCCCTCTGGCGGGGGGACGAGCCTTCTCCCACTCGGTCTTCAGTGATGGTCAGGTTCCA
GCGATCGCATATTCGGTTTGGCACCTTTGAACGGCTCTACTATCTGCAACGGCGGGATTTGTTACAGCAACTCCTCGACC
ATGTGGTGGAACATTACTACGACGAATATGTTGGGGATGAGGATGCCTACGCCCTGTTTTACGCTGATTTGGTGAAGCGG
GTGGCACGATTAGCGGCCCAGTGGATGGCGGCGGGCTTTTGCCACGGGGTATTAAATACGGACAATATGGCAATTACGGG
GGAAAGCTTTGATTATGGACCCTACGCGTTTATTTCCAGCTATGACCGCAAGTTTACGGCGGCTTACTTCGACTACAGTG
GTCGCTATAGCTACGGCAACCAACCAATGATCTGTCGTCTGAATTTGGAAATGTTGCAAATGCCCCTGGCGCTGGTGATG
GATAAGCGGGATTTGGCGACGGGCCTCGTGAATTATGAAATCGAATATGAGCAAACCTATCGCCAGTTAATGCTCGAAAA
ATTGGGGCTGCGAGATTTGCCGGAAGATCTAGGGGCCGATCTGTTTGCCGCCACCCTAGCACTGTTGGAGGAAACCCAAA
CGGGCTACCACGACTTTTTCTATCAGTTGGCAGCTCAGTTTAATTACGCTTGGCGATCGCATTCCAGCACCATTTTGGAA
AATAGTGATTTGTCAGGGCCGCTCTTTGAACAATGGCAAGGACTTTACCAGCGGGCTTTACAAGAAATCCCTGAACCTGA
GTTGGCACAAATTGGCGATCGCCTCCAGCAGACCAATCCAAAAACGGCTCTACTGCGTCCGGTGATCGAATCTGTTTGGG
AACCGATCACCACAGAAAATAACTGGCAACCCTTTAACGAGTTACTCGACAGAATTCGCACGAAACAATAA

Upstream 100 bases:

>100_bases
TTCCGGGTGGTCGTGGCGCAACACCACATAACCATCCACTTGGTACATAATCGGATCTGCCATAATATGCCTTAATGCTT
TTTGGTTTAATTGTACGCCT

Downstream 100 bases:

>100_bases
TCTTTTGAACGAAACAGTTTTTATTTTGATTGAGATTAACCCCGATGGAATGGATAGACGAAGCTAAAGAACTCTTTAAA
AAAATACCCTTTTTTGTGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 476; Mature: 475

Protein sequence:

>476_residues
MAPISELTQNPLVCLPYEQVFASLGDRFSDEVTAADFPHHELRFRNDAVLEKLGLEPKQVDDQDFLEAFGQFQAPHPLRA
MCYHGYQFGQYNPQLGDGRGFLYGQVRAQDGLLYDLGTKGSGQTPYSRNGDGRLTLKGGVREVLAAEALHQLGVNTSRCL
SLIETGESLWRGDEPSPTRSSVMVRFQRSHIRFGTFERLYYLQRRDLLQQLLDHVVEHYYDEYVGDEDAYALFYADLVKR
VARLAAQWMAAGFCHGVLNTDNMAITGESFDYGPYAFISSYDRKFTAAYFDYSGRYSYGNQPMICRLNLEMLQMPLALVM
DKRDLATGLVNYEIEYEQTYRQLMLEKLGLRDLPEDLGADLFAATLALLEETQTGYHDFFYQLAAQFNYAWRSHSSTILE
NSDLSGPLFEQWQGLYQRALQEIPEPELAQIGDRLQQTNPKTALLRPVIESVWEPITTENNWQPFNELLDRIRTKQ

Sequences:

>Translated_476_residues
MAPISELTQNPLVCLPYEQVFASLGDRFSDEVTAADFPHHELRFRNDAVLEKLGLEPKQVDDQDFLEAFGQFQAPHPLRA
MCYHGYQFGQYNPQLGDGRGFLYGQVRAQDGLLYDLGTKGSGQTPYSRNGDGRLTLKGGVREVLAAEALHQLGVNTSRCL
SLIETGESLWRGDEPSPTRSSVMVRFQRSHIRFGTFERLYYLQRRDLLQQLLDHVVEHYYDEYVGDEDAYALFYADLVKR
VARLAAQWMAAGFCHGVLNTDNMAITGESFDYGPYAFISSYDRKFTAAYFDYSGRYSYGNQPMICRLNLEMLQMPLALVM
DKRDLATGLVNYEIEYEQTYRQLMLEKLGLRDLPEDLGADLFAATLALLEETQTGYHDFFYQLAAQFNYAWRSHSSTILE
NSDLSGPLFEQWQGLYQRALQEIPEPELAQIGDRLQQTNPKTALLRPVIESVWEPITTENNWQPFNELLDRIRTKQ
>Mature_475_residues
APISELTQNPLVCLPYEQVFASLGDRFSDEVTAADFPHHELRFRNDAVLEKLGLEPKQVDDQDFLEAFGQFQAPHPLRAM
CYHGYQFGQYNPQLGDGRGFLYGQVRAQDGLLYDLGTKGSGQTPYSRNGDGRLTLKGGVREVLAAEALHQLGVNTSRCLS
LIETGESLWRGDEPSPTRSSVMVRFQRSHIRFGTFERLYYLQRRDLLQQLLDHVVEHYYDEYVGDEDAYALFYADLVKRV
ARLAAQWMAAGFCHGVLNTDNMAITGESFDYGPYAFISSYDRKFTAAYFDYSGRYSYGNQPMICRLNLEMLQMPLALVMD
KRDLATGLVNYEIEYEQTYRQLMLEKLGLRDLPEDLGADLFAATLALLEETQTGYHDFFYQLAAQFNYAWRSHSSTILEN
SDLSGPLFEQWQGLYQRALQEIPEPELAQIGDRLQQTNPKTALLRPVIESVWEPITTENNWQPFNELLDRIRTKQ

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=330, Percent_Identity=35.4545454545455, Blast_Score=202, Evalue=7e-52,
Organism=Escherichia coli, GI1787999, Length=368, Percent_Identity=35.8695652173913, Blast_Score=229, Evalue=4e-61,
Organism=Saccharomyces cerevisiae, GI6325034, Length=471, Percent_Identity=27.1762208067941, Blast_Score=147, Evalue=5e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 54582; Mature: 54451

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPISELTQNPLVCLPYEQVFASLGDRFSDEVTAADFPHHELRFRNDAVLEKLGLEPKQV
CCCHHHHHCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCCC
DDQDFLEAFGQFQAPHPLRAMCYHGYQFGQYNPQLGDGRGFLYGQVRAQDGLLYDLGTKG
CCHHHHHHHHCCCCCCHHHHHHHCCEECCCCCCCCCCCCEEEEEEEECCCCEEEECCCCC
SGQTPYSRNGDGRLTLKGGVREVLAAEALHQLGVNTSRCLSLIETGESLWRGDEPSPTRS
CCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHH
SVMVRFQRSHIRFGTFERLYYLQRRDLLQQLLDHVVEHYYDEYVGDEDAYALFYADLVKR
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
VARLAAQWMAAGFCHGVLNTDNMAITGESFDYGPYAFISSYDRKFTAAYFDYSGRYSYGN
HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCC
QPMICRLNLEMLQMPLALVMDKRDLATGLVNYEIEYEQTYRQLMLEKLGLRDLPEDLGAD
CCEEEEECHHHHHHHHHHHHCHHHHHHHHHHEEEEHHHHHHHHHHHHCCCCCCCHHHCHH
LFAATLALLEETQTGYHDFFYQLAAQFNYAWRSHSSTILENSDLSGPLFEQWQGLYQRAL
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHH
QEIPEPELAQIGDRLQQTNPKTALLRPVIESVWEPITTENNWQPFNELLDRIRTKQ
HHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
APISELTQNPLVCLPYEQVFASLGDRFSDEVTAADFPHHELRFRNDAVLEKLGLEPKQV
CCHHHHHCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCCC
DDQDFLEAFGQFQAPHPLRAMCYHGYQFGQYNPQLGDGRGFLYGQVRAQDGLLYDLGTKG
CCHHHHHHHHCCCCCCHHHHHHHCCEECCCCCCCCCCCCEEEEEEEECCCCEEEECCCCC
SGQTPYSRNGDGRLTLKGGVREVLAAEALHQLGVNTSRCLSLIETGESLWRGDEPSPTRS
CCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHH
SVMVRFQRSHIRFGTFERLYYLQRRDLLQQLLDHVVEHYYDEYVGDEDAYALFYADLVKR
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
VARLAAQWMAAGFCHGVLNTDNMAITGESFDYGPYAFISSYDRKFTAAYFDYSGRYSYGN
HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCC
QPMICRLNLEMLQMPLALVMDKRDLATGLVNYEIEYEQTYRQLMLEKLGLRDLPEDLGAD
CCEEEEECHHHHHHHHHHHHCHHHHHHHHHHEEEEHHHHHHHHHHHHCCCCCCCHHHCHH
LFAATLALLEETQTGYHDFFYQLAAQFNYAWRSHSSTILENSDLSGPLFEQWQGLYQRAL
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHH
QEIPEPELAQIGDRLQQTNPKTALLRPVIESVWEPITTENNWQPFNELLDRIRTKQ
HHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA