| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170076682
Identifier: 170076682
GI number: 170076682
Start: 51282
End: 51773
Strand: Direct
Name: 170076682
Synonym: SYNPCC7002_A0047
Alternate gene names: NA
Gene position: 51282-51773 (Clockwise)
Preceding gene: 170076681
Following gene: 170076683
Centisome position: 1.7
GC content: 55.28
Gene sequence:
>492_bases ATGGCCCCTGTGACCTCTGCCCCGGAAAGTAGCACAACACAATACATTAGTATCCTTTTGGCCGATGGTTTTCGGGCCAT GGTACCCACGGCTCAATTGGTCGAAACGATCAATGTCGAGTTGGGACACATTGTGCAAATGCCAGATTTGCCGCCTGCGG TGGTGGGGGTCTGTGGCTGGCGCGGCGATGTGCTGTGGCTGGTGGATTTAGCCTATGCCCTGCGTTTGCCTCCTTTATTG GCTGGTGATTATGGGCGATCGCAATGCCATGTTTTACGGGTTACGGTCAACCACCAGACATTCGGGATTCTCGTCGCCGA GGTGCAGCATCTCATACGCGGCGATCGCCTGGAGTTATTACCTGGTCCTCCAGGGCAAATCCCCCCTGAGGTTTCAGCTT TGGTGGCTGGCCAGTTTCGGACGGCTTCGGGGGAAACCATCTTGAGCATCAACCTCGAAGCCTTGCTAGATCACCTCAAA TCCCCAGGCTAA
Upstream 100 bases:
>100_bases ACGCGGTACGGCGTTGGATCCCTTAAGCTTGGCGCTGCCTGATTTGCCGTCCCGTCTAGCGCAACTTTTGTTGACTGAAG TTTGATTTGGAGCGTTGTTT
Downstream 100 bases:
>100_bases TTTTTCCAGACTGAATAATGAATCGGCCCAATGTTTTGGCCCCTCATTTTTTCATTTCCCTGCGTTTATCTAAATTGAAA TTCCCTGAAACTGCCATGAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 163; Mature: 162
Protein sequence:
>163_residues MAPVTSAPESSTTQYISILLADGFRAMVPTAQLVETINVELGHIVQMPDLPPAVVGVCGWRGDVLWLVDLAYALRLPPLL AGDYGRSQCHVLRVTVNHQTFGILVAEVQHLIRGDRLELLPGPPGQIPPEVSALVAGQFRTASGETILSINLEALLDHLK SPG
Sequences:
>Translated_163_residues MAPVTSAPESSTTQYISILLADGFRAMVPTAQLVETINVELGHIVQMPDLPPAVVGVCGWRGDVLWLVDLAYALRLPPLL AGDYGRSQCHVLRVTVNHQTFGILVAEVQHLIRGDRLELLPGPPGQIPPEVSALVAGQFRTASGETILSINLEALLDHLK SPG >Mature_162_residues APVTSAPESSTTQYISILLADGFRAMVPTAQLVETINVELGHIVQMPDLPPAVVGVCGWRGDVLWLVDLAYALRLPPLLA GDYGRSQCHVLRVTVNHQTFGILVAEVQHLIRGDRLELLPGPPGQIPPEVSALVAGQFRTASGETILSINLEALLDHLKS PG
Specific function: Unknown
COG id: COG0835
COG function: function code NT; Chemotaxis signal transduction protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17458; Mature: 17326
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: PS50851 CHEW
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPVTSAPESSTTQYISILLADGFRAMVPTAQLVETINVELGHIVQMPDLPPAVVGVCGW CCCCCCCCCCCHHHHHHHHHHCCCHHHCCHHHHHHHHCCCCCEEEECCCCCHHHEEECCC RGDVLWLVDLAYALRLPPLLAGDYGRSQCHVLRVTVNHQTFGILVAEVQHLIRGDRLELL CCCCHHHHHHHHHHHCCCCEECCCCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEC PGPPGQIPPEVSALVAGQFRTASGETILSINLEALLDHLKSPG CCCCCCCCCHHHHHHHCCEECCCCCEEEEEEHHHHHHHHCCCC >Mature Secondary Structure APVTSAPESSTTQYISILLADGFRAMVPTAQLVETINVELGHIVQMPDLPPAVVGVCGW CCCCCCCCCCHHHHHHHHHHCCCHHHCCHHHHHHHHCCCCCEEEECCCCCHHHEEECCC RGDVLWLVDLAYALRLPPLLAGDYGRSQCHVLRVTVNHQTFGILVAEVQHLIRGDRLELL CCCCHHHHHHHHHHHCCCCEECCCCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEC PGPPGQIPPEVSALVAGQFRTASGETILSINLEALLDHLKSPG CCCCCCCCCHHHHHHHCCEECCCCCEEEEEEHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA