Click here to switch to the map view.

The map label for this gene is 170026118

Identifier: 170026118

GI number: 170026118

Start: 4304687

End: 4305088

Strand: Reverse

Name: 170026118

Synonym: YPK_3905

Alternate gene names: NA

Gene position: 4305088-4304687 (Counterclockwise)

Preceding gene: 170026119

Following gene: 170026117

Centisome position: 91.8

GC content: 56.47

Gene sequence:

>402_bases
TTGAATCACTCGCAACAGCGGACGCTACAACGGCTATTGGCGCTACGGCAGCGGCAGGAACGGCGGTTACGCCAGCAACT
GGGACAACTGCGGCGTGAGCAGCAGCAACAGGAGCAGCAACAGGAGAATGGCCGTCGCCGGCATCAACAACTCTGCCAGC
AACTACAACAGCTTGCGCAGTGGTGCGGAATGCTGACCCCGCGAGAGGCGGATGAACAAAAAGTATTACGGCAGGCGGTG
TATCAGGCGGAACGGCAGGCGAAAAAACAGCTAAACGCATGGGTGGCGCAAGGGCGGCAACAGGTCAGTGCCATTGAGCG
ACAACAAGCGCGGTTACGGCGTAATCAGCGTGAACAGGAAAAATTACGGATGCTGACAGAAGATGAGTCGAATCGATATT
GA

Upstream 100 bases:

>100_bases
CGGCAATATGCGCCTTTTTACAACAAGACCACAGCCTAACGCGTGACCCAGATACTGCTCATCTTGATACCACTCTGGAA
CACCTGGCGCAGGTTGTCGG

Downstream 100 bases:

>100_bases
AGGCGCGTTACCGCCACTAAGAGAACAAGGTTATTCAAAAGAGCGATCAACACATTGGGATCATGAGAGGCAACGTCAGC
AGTTTGCTCGCTGTTTCTCC

Product: type III secretion system apparatus protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MNHSQQRTLQRLLALRQRQERRLRQQLGQLRREQQQQEQQQENGRRRHQQLCQQLQQLAQWCGMLTPREADEQKVLRQAV
YQAERQAKKQLNAWVAQGRQQVSAIERQQARLRRNQREQEKLRMLTEDESNRY

Sequences:

>Translated_133_residues
MNHSQQRTLQRLLALRQRQERRLRQQLGQLRREQQQQEQQQENGRRRHQQLCQQLQQLAQWCGMLTPREADEQKVLRQAV
YQAERQAKKQLNAWVAQGRQQVSAIERQQARLRRNQREQEKLRMLTEDESNRY
>Mature_133_residues
MNHSQQRTLQRLLALRQRQERRLRQQLGQLRREQQQQEQQQENGRRRHQQLCQQLQQLAQWCGMLTPREADEQKVLRQAV
YQAERQAKKQLNAWVAQGRQQVSAIERQQARLRRNQREQEKLRMLTEDESNRY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16324; Mature: 16324

Theoretical pI: Translated: 11.87; Mature: 11.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHSQQRTLQRLLALRQRQERRLRQQLGQLRREQQQQEQQQENGRRRHQQLCQQLQQLAQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WCGMLTPREADEQKVLRQAVYQAERQAKKQLNAWVAQGRQQVSAIERQQARLRRNQREQE
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLRMLTEDESNRY
HHHHHHHHCCCCC
>Mature Secondary Structure
MNHSQQRTLQRLLALRQRQERRLRQQLGQLRREQQQQEQQQENGRRRHQQLCQQLQQLAQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WCGMLTPREADEQKVLRQAVYQAERQAKKQLNAWVAQGRQQVSAIERQQARLRRNQREQE
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLRMLTEDESNRY
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA