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The map label for this gene is rhaR [H]

Identifier: 170026054

GI number: 170026054

Start: 4231696

End: 4232568

Strand: Reverse

Name: rhaR [H]

Synonym: YPK_3841

Alternate gene names: 170026054

Gene position: 4232568-4231696 (Counterclockwise)

Preceding gene: 170026055

Following gene: 170026052

Centisome position: 90.26

GC content: 48.8

Gene sequence:

>873_bases
ATGCGGGCACCACTGCTGTTAGAAAGCCGGGATTATTTACTCTCGGAACAGATGCCGGTGGCGGTAACCAATCGATACCC
GCAGGAAACCTTCGTAGAGCATACCCATCAATTTTGTGAAATTGTGATTGTCTGGCGGGGAAATGGTTTACATGTCCTGA
ATGACCACCCTTATCGCATTACCTGTGGGGACGTTTTTTATATTCAAGCCGCAGACCATCATAGCTACGAATCCGTACAT
GATTTGGTATTAGATAATATTATCTATTGCCCAGAGCGACTCCACCTGAATGCGCAATGGCATAAGTTACTGCCGCCTTT
GGGACCTGAACAGAATCAGGGCTATTGGCGGTTAACGACACAAGGCATGGCGCAGGCACGGCCCATCATTCAACAGTTGG
CGCAGGAATCGCGCAAGACGGATTCCTGGTCGATACAACTGACCGAAGTCCTGTTATTGCAACTTGCCATTGTGCTGAAA
CGTCATCGCTATAGAGCTGAGCAAGCTCACTTACTGCCCGATGGCGAACAGCTTGATTTAATCATGTCTGCGTTGCAGCA
AAGTCTGGGAGCCTATTTTGATATGGCTAATTTCTGCCATAAAAATCAGTTGGTTGAACGTTCTCTCAAGCAACTGTTCC
GCCAGCAGACCGGCATGAGTATCAGCCACTACCTACGCCAGATTCGCTTGTGTCATGCCAAGTGTTTATTACGCGGCAGT
GAGCATCGTATCAGTGATATCGCCGCTCGCTGTGGGTTTGAGGACAGTAACTATTTCTCGGCTGTTTTTACCCGTGAAGC
CGGTATGACCCCACGAGATTATCGCCAGCGCTTTATCCGCTCCCCGGTATTACCCACTAAAAATGAACCGTGA

Upstream 100 bases:

>100_bases
AGGGTATTACGGTAAAAATTGAAGGGTATCACGGTAAAAATTGGCCGTTTCAAGATAATGAACAAGTCATTAATTAACCT
ATAACGATAAGGCTGCACAC

Downstream 100 bases:

>100_bases
TAACCACAGCGATCTCATTTAGCATTATTCTTCACCACGATTAGCCATAAGATAACGGGCAGGTTTTTCAACGCTGCCCG
TCAATATCATCATCTTTAAT

Product: transcriptional activator RhaR

Products: NA

Alternate protein names: L-rhamnose operon transcriptional activator rhaR [H]

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MRAPLLLESRDYLLSEQMPVAVTNRYPQETFVEHTHQFCEIVIVWRGNGLHVLNDHPYRITCGDVFYIQAADHHSYESVH
DLVLDNIIYCPERLHLNAQWHKLLPPLGPEQNQGYWRLTTQGMAQARPIIQQLAQESRKTDSWSIQLTEVLLLQLAIVLK
RHRYRAEQAHLLPDGEQLDLIMSALQQSLGAYFDMANFCHKNQLVERSLKQLFRQQTGMSISHYLRQIRLCHAKCLLRGS
EHRISDIAARCGFEDSNYFSAVFTREAGMTPRDYRQRFIRSPVLPTKNEP

Sequences:

>Translated_290_residues
MRAPLLLESRDYLLSEQMPVAVTNRYPQETFVEHTHQFCEIVIVWRGNGLHVLNDHPYRITCGDVFYIQAADHHSYESVH
DLVLDNIIYCPERLHLNAQWHKLLPPLGPEQNQGYWRLTTQGMAQARPIIQQLAQESRKTDSWSIQLTEVLLLQLAIVLK
RHRYRAEQAHLLPDGEQLDLIMSALQQSLGAYFDMANFCHKNQLVERSLKQLFRQQTGMSISHYLRQIRLCHAKCLLRGS
EHRISDIAARCGFEDSNYFSAVFTREAGMTPRDYRQRFIRSPVLPTKNEP
>Mature_290_residues
MRAPLLLESRDYLLSEQMPVAVTNRYPQETFVEHTHQFCEIVIVWRGNGLHVLNDHPYRITCGDVFYIQAADHHSYESVH
DLVLDNIIYCPERLHLNAQWHKLLPPLGPEQNQGYWRLTTQGMAQARPIIQQLAQESRKTDSWSIQLTEVLLLQLAIVLK
RHRYRAEQAHLLPDGEQLDLIMSALQQSLGAYFDMANFCHKNQLVERSLKQLFRQQTGMSISHYLRQIRLCHAKCLLRGS
EHRISDIAARCGFEDSNYFSAVFTREAGMTPRDYRQRFIRSPVLPTKNEP

Specific function: Activates expression of the rhaSR operon in response to L-rhamnose [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI171474011, Length=275, Percent_Identity=53.8181818181818, Blast_Score=301, Evalue=4e-83,
Organism=Escherichia coli, GI1790339, Length=272, Percent_Identity=36.7647058823529, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI1788725, Length=242, Percent_Identity=24.7933884297521, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790391, Length=70, Percent_Identity=37.1428571428571, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33804; Mature: 33804

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAPLLLESRDYLLSEQMPVAVTNRYPQETFVEHTHQFCEIVIVWRGNGLHVLNDHPYRI
CCCCCEECCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHEEEEEEECCCCEEEECCCCEEE
TCGDVFYIQAADHHSYESVHDLVLDNIIYCPERLHLNAQWHKLLPPLGPEQNQGYWRLTT
EECCEEEEEECCCCCHHHHHHHHHHHHHHCCHHEECCCHHHHHCCCCCCCCCCCEEEEEH
QGMAQARPIIQQLAQESRKTDSWSIQLTEVLLLQLAIVLKRHRYRAEQAHLLPDGEQLDL
HHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
IMSALQQSLGAYFDMANFCHKNQLVERSLKQLFRQQTGMSISHYLRQIRLCHAKCLLRGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
EHRISDIAARCGFEDSNYFSAVFTREAGMTPRDYRQRFIRSPVLPTKNEP
CHHHHHHHHHCCCCCCCHHHHEEECCCCCCHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MRAPLLLESRDYLLSEQMPVAVTNRYPQETFVEHTHQFCEIVIVWRGNGLHVLNDHPYRI
CCCCCEECCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHEEEEEEECCCCEEEECCCCEEE
TCGDVFYIQAADHHSYESVHDLVLDNIIYCPERLHLNAQWHKLLPPLGPEQNQGYWRLTT
EECCEEEEEECCCCCHHHHHHHHHHHHHHCCHHEECCCHHHHHCCCCCCCCCCCEEEEEH
QGMAQARPIIQQLAQESRKTDSWSIQLTEVLLLQLAIVLKRHRYRAEQAHLLPDGEQLDL
HHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
IMSALQQSLGAYFDMANFCHKNQLVERSLKQLFRQQTGMSISHYLRQIRLCHAKCLLRGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
EHRISDIAARCGFEDSNYFSAVFTREAGMTPRDYRQRFIRSPVLPTKNEP
CHHHHHHHHHCCCCCCCHHHHEEECCCCCCHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA