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The map label for this gene is rbfA [H]

Identifier: 170025944

GI number: 170025944

Start: 4120003

End: 4120413

Strand: Reverse

Name: rbfA [H]

Synonym: YPK_3729

Alternate gene names: 170025944

Gene position: 4120413-4120003 (Counterclockwise)

Preceding gene: 170025945

Following gene: 170025943

Centisome position: 87.87

GC content: 44.53

Gene sequence:

>411_bases
ATGGCAAAAGAATTTAGTCGTTCTCAGCGTGTTTCTCAGGAAATGCAAAAAGAGATCGCACTCATCTTACAGCGTGAAAT
CAAAGATCCTCGTGTTGGTATGGCTACAGTGTCTGGCATCGAACTGTCCCGTGATTTAGCCTACGCTAAAGTATTTGTGA
CCTTCTTGAATGTGTTAACTGATAACGCAGATCCGGATACGGTTAAAAACGGCATTAAAGCTTTGCAAGATGCTTCAGGT
TATATCCGCACTTTGCTGGGTAAAGCCATGCGTCTGCGTATCGTGCCAGAGCTGACCTTTGCCTATGATAACTCCCTGAT
TGAAGGGATGCGGATGTCTAACCTGGTGAGCAATGTCATCAAAAATGATGTAGAGCGTCAGGTTAATCCAGGTAGTGACG
AGGAGAAGTAA

Upstream 100 bases:

>100_bases
TCGAAATTATCGAAATCAAACGTACCATTGCTTAAGCACTTCTGATTTGCAAATATCCATTTGGGGGGCCTTGGCCCCCC
AAACTGTCTGGAGAATCCAA

Downstream 100 bases:

>100_bases
TGGGGCGTCCACGTCGTCGCGGCCGTGACATTAACGGCGTTTTGCTATTGGATAAGCCGCTAGGCCTCTCTTCTAATGAC
GTTTTGCAAAAAGTAAAACG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MAKEFSRSQRVSQEMQKEIALILQREIKDPRVGMATVSGIELSRDLAYAKVFVTFLNVLTDNADPDTVKNGIKALQDASG
YIRTLLGKAMRLRIVPELTFAYDNSLIEGMRMSNLVSNVIKNDVERQVNPGSDEEK

Sequences:

>Translated_136_residues
MAKEFSRSQRVSQEMQKEIALILQREIKDPRVGMATVSGIELSRDLAYAKVFVTFLNVLTDNADPDTVKNGIKALQDASG
YIRTLLGKAMRLRIVPELTFAYDNSLIEGMRMSNLVSNVIKNDVERQVNPGSDEEK
>Mature_135_residues
AKEFSRSQRVSQEMQKEIALILQREIKDPRVGMATVSGIELSRDLAYAKVFVTFLNVLTDNADPDTVKNGIKALQDASGY
IRTLLGKAMRLRIVPELTFAYDNSLIEGMRMSNLVSNVIKNDVERQVNPGSDEEK

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=136, Percent_Identity=75.7352941176471, Blast_Score=206, Evalue=3e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 15263; Mature: 15132

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKEFSRSQRVSQEMQKEIALILQREIKDPRVGMATVSGIELSRDLAYAKVFVTFLNVLT
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DNADPDTVKNGIKALQDASGYIRTLLGKAMRLRIVPELTFAYDNSLIEGMRMSNLVSNVI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNDVERQVNPGSDEEK
HHHHHHCCCCCCCCCC
>Mature Secondary Structure 
AKEFSRSQRVSQEMQKEIALILQREIKDPRVGMATVSGIELSRDLAYAKVFVTFLNVLT
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DNADPDTVKNGIKALQDASGYIRTLLGKAMRLRIVPELTFAYDNSLIEGMRMSNLVSNVI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNDVERQVNPGSDEEK
HHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA