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The map label for this gene is yraR [H]

Identifier: 170025918

GI number: 170025918

Start: 4090025

End: 4090663

Strand: Reverse

Name: yraR [H]

Synonym: YPK_3703

Alternate gene names: 170025918

Gene position: 4090663-4090025 (Counterclockwise)

Preceding gene: 170025919

Following gene: 170025900

Centisome position: 87.23

GC content: 56.03

Gene sequence:

>639_bases
ATGGCGAAGGTATTATTACTGGGGGCGAGTGGCCTGGTAGGCGGCGAATTATTGCGCCTGTTGCGTTTGGATGCCCGAGT
GACATCGATCATTGCACCAACCCGTAACCCATTGCCTGCTATGAATAAATTGATTAATCCACACGGCGAAAATATCGGTC
AGTTGCTGAAAATGCTGCATGAGCCCGTGGACTTGGTCTTTTGCGCTCTGGGGACCACCCGCAAGCAGGCGGGCAGTCAG
GCGGCATTTCGTCAGGTGGATTATCGGCTGGTATTGCTAAGCGGTGAAACCGGCCGGCGTCTGGGCGCGCGGCATTTCCT
CTTGGTGAGCGCATTAGGGGCCAATCCCGATTCGTGGCTGTTTTATAACCGCACTAAAGGGGAAGCGGAACGGGATTTGC
AGGCTCAAGGCTGGCCGCAATTGACCTTCGCCCGCCCTTCGATGTTGGCCGGCCAACGGGCGACGCCACGGTTGTTGGAG
AACCTCAGCGCCCCTCTATTTGCCTTGTTACCGGCTAAATGGCGCTTGATTAACGCCAAAGATGTAGCACAAGCGATGTT
GGATCAGGCGTTTGCTCCGCCGCAGGAGGGCGTTACGGTGTTGTCATCTGCCCAAATGCAACCAACCTTGCGTCCTTGA

Upstream 100 bases:

>100_bases
TGGTTTATTATTCTTATAAATCCCACTTCACTCGCACCCTGACCGCTTTAAGTATGAAGGGGATAGGTGTTGGGGCACTT
ACATTTTTTCGGGAGGTCAG

Downstream 100 bases:

>100_bases
CGCCGCAGGGGGGGCTGTGCGTCCGGGCCCCTTATTCGCACTAAGTTATACCAGCGTAACCGTTTGATTATCATAGGCAA
CGCTGACCCCGGTGGGTAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MAKVLLLGASGLVGGELLRLLRLDARVTSIIAPTRNPLPAMNKLINPHGENIGQLLKMLHEPVDLVFCALGTTRKQAGSQ
AAFRQVDYRLVLLSGETGRRLGARHFLLVSALGANPDSWLFYNRTKGEAERDLQAQGWPQLTFARPSMLAGQRATPRLLE
NLSAPLFALLPAKWRLINAKDVAQAMLDQAFAPPQEGVTVLSSAQMQPTLRP

Sequences:

>Translated_212_residues
MAKVLLLGASGLVGGELLRLLRLDARVTSIIAPTRNPLPAMNKLINPHGENIGQLLKMLHEPVDLVFCALGTTRKQAGSQ
AAFRQVDYRLVLLSGETGRRLGARHFLLVSALGANPDSWLFYNRTKGEAERDLQAQGWPQLTFARPSMLAGQRATPRLLE
NLSAPLFALLPAKWRLINAKDVAQAMLDQAFAPPQEGVTVLSSAQMQPTLRP
>Mature_211_residues
AKVLLLGASGLVGGELLRLLRLDARVTSIIAPTRNPLPAMNKLINPHGENIGQLLKMLHEPVDLVFCALGTTRKQAGSQA
AFRQVDYRLVLLSGETGRRLGARHFLLVSALGANPDSWLFYNRTKGEAERDLQAQGWPQLTFARPSMLAGQRATPRLLEN
LSAPLFALLPAKWRLINAKDVAQAMLDQAFAPPQEGVTVLSSAQMQPTLRP

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To yeast YER004W [H]

Homologues:

Organism=Homo sapiens, GI148728172, Length=212, Percent_Identity=27.8301886792453, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI148728168, Length=212, Percent_Identity=27.8301886792453, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI148728164, Length=212, Percent_Identity=27.8301886792453, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI148728166, Length=212, Percent_Identity=27.8301886792453, Blast_Score=76, Evalue=2e-14,
Organism=Escherichia coli, GI87082218, Length=207, Percent_Identity=53.6231884057971, Blast_Score=227, Evalue=3e-61,
Organism=Caenorhabditis elegans, GI71983631, Length=203, Percent_Identity=30.0492610837438, Blast_Score=97, Evalue=7e-21,
Organism=Saccharomyces cerevisiae, GI6320840, Length=158, Percent_Identity=32.9113924050633, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000534 [H]

Pfam domain/function: PF01118 Semialdhyde_dh [H]

EC number: NA

Molecular weight: Translated: 23147; Mature: 23016

Theoretical pI: Translated: 11.08; Mature: 11.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKVLLLGASGLVGGELLRLLRLDARVTSIIAPTRNPLPAMNKLINPHGENIGQLLKMLH
CCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCHHHHHHHHH
EPVDLVFCALGTTRKQAGSQAAFRQVDYRLVLLSGETGRRLGARHFLLVSALGANPDSWL
CHHHHHHHHCCCHHHHCCHHHHHHHCCEEEEEEECCCCCHHHHHHHHEEHHHCCCCCCEE
FYNRTKGEAERDLQAQGWPQLTFARPSMLAGQRATPRLLENLSAPLFALLPAKWRLINAK
EEECCCCCHHHCCCCCCCCCEEECCCHHHCCCCCCHHHHHHCCCCCEECCCCCEEEECHH
DVAQAMLDQAFAPPQEGVTVLSSAQMQPTLRP
HHHHHHHHHHCCCCHHCEEEHHCCCCCCCCCC
>Mature Secondary Structure 
AKVLLLGASGLVGGELLRLLRLDARVTSIIAPTRNPLPAMNKLINPHGENIGQLLKMLH
CEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCHHHHHHHHH
EPVDLVFCALGTTRKQAGSQAAFRQVDYRLVLLSGETGRRLGARHFLLVSALGANPDSWL
CHHHHHHHHCCCHHHHCCHHHHHHHCCEEEEEEECCCCCHHHHHHHHEEHHHCCCCCCEE
FYNRTKGEAERDLQAQGWPQLTFARPSMLAGQRATPRLLENLSAPLFALLPAKWRLINAK
EEECCCCCHHHCCCCCCCCCEEECCCHHHCCCCCCHHHHHHCCCCCEECCCCCEEEECHH
DVAQAMLDQAFAPPQEGVTVLSSAQMQPTLRP
HHHHHHHHHHCCCCHHCEEEHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]