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The map label for this gene is phnM [H]

Identifier: 170025915

GI number: 170025915

Start: 4087519

End: 4088655

Strand: Direct

Name: phnM [H]

Synonym: YPK_3700

Alternate gene names: 170025915

Gene position: 4087519-4088655 (Clockwise)

Preceding gene: 170025914

Following gene: 170025916

Centisome position: 87.16

GC content: 55.06

Gene sequence:

>1137_bases
ATGATCCTCAATAACGTCAGCCTGATTCTTGAAGACAGCGTAGTCAGTGGATCGCTGGAAATCGTAGACGGTGTCATCCG
CAGTTACAGTGATCGCCCGACGCAGTTACCCGCCGCAATAGATGGCGAGAATGGCTGGCTACTGCCGGGGCTGATTGAAC
TGCATACCGATAATCTGGACAAATTTTTCACCCCGCGTCCCAATGTCGATTGGCCCGCCCATTCAGCGATGAGCAGCCAC
GATGCGCTGATGGTGGCCTGCGGTATCACCACGGTATTGGATGCGGTTGCCGTTGGTGATGTGCGCGATGGGGGTCATCG
GCTGGATAATCTGCAAAAGATGATTAATGCCGTGGTAGATAGCCAGCGTGCGGGCCTGAACCGGGCCGAGCACCGTATTC
ATTTACGCTGTGAACTACCCTATGAAAATACTCTGCCACTGTTCGAAACCCTGATGGCGCAACCTGCGTTATCGTTGGTG
TCATTGATGGATCATTCACCGGGTCAACGTCAGTTCGCTTCGCGTGAGAAATACCGTGAATATTATCAGGGTAAATATCA
TCTTAGCGATCCGCAGATGGCGGCGTTTGAAGAAGAGCAGGTCGCACTCTCCGCACGTTGGGCAGGGCCTAACCGCTCGG
CGATTGCCGCCCAATGTCGCGAGCGAGGCATTGCGCTAGCCAGCCACGATGATGCGACAGCCGCTCATGTGGCGGAATCA
CAAGCACTGGGCAGTGTGATTGCCGAGTTCCCGACCACAGAGGTGGCCGCCACCGCCTCTCATCAACTCGGTTTACAGGT
ATTGATGGGCGCACCGAATATTGTCCGTGGTGGCTCTCACTCCGGTAATGTTGCCGCTCATCACCTGGCTTCTCTGGGGG
TGCTGGATATTTTATCTTCTGATTATTACCCCGCCAGCCTGATGGATGCAGCGTTCCGTATCGCACACGATGAGAGCAAC
CGCTTCAGCTTGCCGCAAGCGGTCAATTTGGTGACCCGTAATCCGGCCAGAGCTTTAGGGCTAAATGACCGGGGTGTGAT
TGCCGAAGGTAAACGGGCTGACTTGATTCTGGCCCGCGCACATGGCGAGAACGTTTATGTGCAAAACGTCTGGCGTCAGG
GAGTTCGGGTGTTCTGA

Upstream 100 bases:

>100_bases
TTGTCGGGATTTTCCACGATGAGAGTGTGCGTAACCATGTCAGTGATCGTTTACTTACCATGACGCCCGCCCCCTCAGAG
ATCCGCACGGAGATCCCTGT

Downstream 100 bases:

>100_bases
TGGCGCGTTTAATCTATCTGATGGGGCCTTCTGGCGCGGGTAAGGATTGCCTGTTATCTGCACTACGAAACGCCACACCG
CAAAATATGGTAGTGGCACA

Product: phosphonate metabolism protein PhnM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MILNNVSLILEDSVVSGSLEIVDGVIRSYSDRPTQLPAAIDGENGWLLPGLIELHTDNLDKFFTPRPNVDWPAHSAMSSH
DALMVACGITTVLDAVAVGDVRDGGHRLDNLQKMINAVVDSQRAGLNRAEHRIHLRCELPYENTLPLFETLMAQPALSLV
SLMDHSPGQRQFASREKYREYYQGKYHLSDPQMAAFEEEQVALSARWAGPNRSAIAAQCRERGIALASHDDATAAHVAES
QALGSVIAEFPTTEVAATASHQLGLQVLMGAPNIVRGGSHSGNVAAHHLASLGVLDILSSDYYPASLMDAAFRIAHDESN
RFSLPQAVNLVTRNPARALGLNDRGVIAEGKRADLILARAHGENVYVQNVWRQGVRVF

Sequences:

>Translated_378_residues
MILNNVSLILEDSVVSGSLEIVDGVIRSYSDRPTQLPAAIDGENGWLLPGLIELHTDNLDKFFTPRPNVDWPAHSAMSSH
DALMVACGITTVLDAVAVGDVRDGGHRLDNLQKMINAVVDSQRAGLNRAEHRIHLRCELPYENTLPLFETLMAQPALSLV
SLMDHSPGQRQFASREKYREYYQGKYHLSDPQMAAFEEEQVALSARWAGPNRSAIAAQCRERGIALASHDDATAAHVAES
QALGSVIAEFPTTEVAATASHQLGLQVLMGAPNIVRGGSHSGNVAAHHLASLGVLDILSSDYYPASLMDAAFRIAHDESN
RFSLPQAVNLVTRNPARALGLNDRGVIAEGKRADLILARAHGENVYVQNVWRQGVRVF
>Mature_378_residues
MILNNVSLILEDSVVSGSLEIVDGVIRSYSDRPTQLPAAIDGENGWLLPGLIELHTDNLDKFFTPRPNVDWPAHSAMSSH
DALMVACGITTVLDAVAVGDVRDGGHRLDNLQKMINAVVDSQRAGLNRAEHRIHLRCELPYENTLPLFETLMAQPALSLV
SLMDHSPGQRQFASREKYREYYQGKYHLSDPQMAAFEEEQVALSARWAGPNRSAIAAQCRERGIALASHDDATAAHVAES
QALGSVIAEFPTTEVAATASHQLGLQVLMGAPNIVRGGSHSGNVAAHHLASLGVLDILSSDYYPASLMDAAFRIAHDESN
RFSLPQAVNLVTRNPARALGLNDRGVIAEGKRADLILARAHGENVYVQNVWRQGVRVF

Specific function: Belongs to an operon involved in alkylphosphonate uptake and C-P lyase. Exact function not known [H]

COG id: COG3454

COG function: function code P; Metal-dependent hydrolase involved in phosphonate metabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790533, Length=378, Percent_Identity=73.5449735449735, Blast_Score=587, Evalue=1e-169,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013108
- InterPro:   IPR011059
- InterPro:   IPR012696 [H]

Pfam domain/function: PF07969 Amidohydro_3 [H]

EC number: NA

Molecular weight: Translated: 41098; Mature: 41098

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILNNVSLILEDSVVSGSLEIVDGVIRSYSDRPTQLPAAIDGENGWLLPGLIELHTDNLD
CEECCEEEEEECCHHCCHHHHHHHHHHHCCCCCCCCCCEEECCCCEECCCEEEEECCCCH
KFFTPRPNVDWPAHSAMSSHDALMVACGITTVLDAVAVGDVRDGGHRLDNLQKMINAVVD
HHCCCCCCCCCCCHHHCCCCCEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
SQRAGLNRAEHRIHLRCELPYENTLPLFETLMAQPALSLVSLMDHSPGQRQFASREKYRE
HHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
YYQGKYHLSDPQMAAFEEEQVALSARWAGPNRSAIAAQCRERGIALASHDDATAAHVAES
HHCCCEECCCCCHHHCCHHHEEEEEEECCCCCHHHHHHHHHCCCEEECCCCCHHHHHHHH
QALGSVIAEFPTTEVAATASHQLGLQVLMGAPNIVRGGSHSGNVAAHHLASLGVLDILSS
HHHHHHHHHCCCCHHHHHHHHHCCEEEEECCCCEECCCCCCCCHHHHHHHHHHHHHHHCC
DYYPASLMDAAFRIAHDESNRFSLPQAVNLVTRNPARALGLNDRGVIAEGKRADLILARA
CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHCCCCCCCCEECCCCCCEEEEEE
HGENVYVQNVWRQGVRVF
CCCEEHHHHHHHCCCCCC
>Mature Secondary Structure
MILNNVSLILEDSVVSGSLEIVDGVIRSYSDRPTQLPAAIDGENGWLLPGLIELHTDNLD
CEECCEEEEEECCHHCCHHHHHHHHHHHCCCCCCCCCCEEECCCCEECCCEEEEECCCCH
KFFTPRPNVDWPAHSAMSSHDALMVACGITTVLDAVAVGDVRDGGHRLDNLQKMINAVVD
HHCCCCCCCCCCCHHHCCCCCEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
SQRAGLNRAEHRIHLRCELPYENTLPLFETLMAQPALSLVSLMDHSPGQRQFASREKYRE
HHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
YYQGKYHLSDPQMAAFEEEQVALSARWAGPNRSAIAAQCRERGIALASHDDATAAHVAES
HHCCCEECCCCCHHHCCHHHEEEEEEECCCCCHHHHHHHHHCCCEEECCCCCHHHHHHHH
QALGSVIAEFPTTEVAATASHQLGLQVLMGAPNIVRGGSHSGNVAAHHLASLGVLDILSS
HHHHHHHHHCCCCHHHHHHHHHCCEEEEECCCCEECCCCCCCCHHHHHHHHHHHHHHHCC
DYYPASLMDAAFRIAHDESNRFSLPQAVNLVTRNPARALGLNDRGVIAEGKRADLILARA
CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHCCCCCCCCEECCCCCCEEEEEE
HGENVYVQNVWRQGVRVF
CCCEEHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2155230; 1840580; 7610040; 9278503 [H]