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The map label for this gene is intB [H]

Identifier: 170025891

GI number: 170025891

Start: 4059757

End: 4061022

Strand: Reverse

Name: intB [H]

Synonym: YPK_3676

Alternate gene names: 170025891

Gene position: 4061022-4059757 (Counterclockwise)

Preceding gene: 170025892

Following gene: 170025890

Centisome position: 86.6

GC content: 49.29

Gene sequence:

>1266_bases
ATGGCTCTGAGTGATGTGAAGGTTCGTACAGCCAAGCCTGAAGCAAAAGCCTATAAACTTACCGACGGCGAAGGCATGGT
GTTACTGGTTCACCCTAACGGCTCAAAGTACTGGCGGCTGCGATATCGCTTTGGTGGTAAAGAGAAGATGCTGGCGCTAG
GGAAGTACCCTGAAATATCGTTGGCTGATGCCAGGGCGCGGCGTGACGAAGCTCGTAAGCTGTTAGCTAACGGTGTGGAC
CCAAGTGAGAGCAAGAAAGCCGTTAAGGTAGAGCAGGAGCAAGAAGCGATAACTTTTGAAGTGGTAGCCAGAGAGTGGCA
TGCCAGTAATCGTCAATGGTCAGAAGCTCACAGTGCTCGAGTGCTCAAAAGCTTAGAGGACAATCTCTTTCAAGCCATAG
GCAAACGGAATATTGCAGACCTCGGAACTCGTGATCTTTTACCTCCAATTAAAGCCGTGGAGATGTCTGGACGTCTTGAG
GTGGCTTCCCGCCTGCAACAACGAACAACAGCGATAATGCGCTATGCCGTTCAAAGCGGTTTAATTGATTACAACCCTGC
GCAGGAGATGGCGGGCGCTGTTGCTACCGGTAAAAGAAAGCACCGTGCTGCACTTGAGTTAAACCGTGTTTCAGAGTTAC
TTCATCGCATCGATTACTACAGTGGCAGGCCATTAACCCGGCTAGCAGTAGAATTGACTTTATTGGTCTTCATCCGTTCC
AGTGAATTACGTTTCGCCCGTTGGTCAGAAGTAGATTTTGAAACCGCCATGTGGACCATCCCCGGAGAACGTGAACCACT
GGAAGGTGTTAAACATTCGCACCGGGGCTCAAAAATGCGCACTCCTCACCTTGTCCCCTTATCCCGCCAGGCTCTCGCCA
TTCTGGGAAAGATCAAAAGCATGAGTGGAAATCGTGAGCTGATCTTTATCGGTGATCACGACCCACGTAAGCCCATGAGT
GAGAACACGGTGAACAAGGCTCTACGCGTTATGGGATATGACACAAAGGTTGAAGTCTGTGGCCACGGTTTCAGAACCAT
GGCTTGTAGTTCATTGATTGAGTCGGGATTGTGGTCTAGGGATGCAGTAGAACGGCAGATGAGCCATCAGGAGCGCAACT
CTGTACGTGCGGCTTATATTCATAAAGCCGAGCACCTAGATGAGCGCAGACTGATGATCCAGTGGTGGGCAGATGATCTT
GATGCAAACAGGCAGCAAGCTATCTCACCTTTTGATTATGCAAAAGTAAATAATCTATTCAAATAA

Upstream 100 bases:

>100_bases
GATTCAATCTACATCAACTTACTGATGCGGGTACAATTGCGGGTATATCCCGGTTCGATAATGTTTGTACCCACGCAGAA
CCCTTGAAAGGATACTCAAC

Downstream 100 bases:

>100_bases
CCATCACCAGTCTTTTATTGTAATACGTCTCATTCAATAGTTTTTATATCACTGAAAGCCTCTGTCAAAAGACAGGGGCT
TTTGCGTTTTAATCAACCTA

Product: integrase family protein

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 421; Mature: 420

Protein sequence:

>421_residues
MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEISLADARARRDEARKLLANGVD
PSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMSGRLE
VASRLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS
SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLVPLSRQALAILGKIKSMSGNRELIFIGDHDPRKPMS
ENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADDL
DANRQQAISPFDYAKVNNLFK

Sequences:

>Translated_421_residues
MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEISLADARARRDEARKLLANGVD
PSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMSGRLE
VASRLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS
SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLVPLSRQALAILGKIKSMSGNRELIFIGDHDPRKPMS
ENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADDL
DANRQQAISPFDYAKVNNLFK
>Mature_420_residues
ALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEISLADARARRDEARKLLANGVDP
SESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMSGRLEV
ASRLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRSS
ELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLVPLSRQALAILGKIKSMSGNRELIFIGDHDPRKPMSE
NTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADDLD
ANRQQAISPFDYAKVNNLFK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788974, Length=400, Percent_Identity=35.75, Blast_Score=243, Evalue=2e-65,
Organism=Escherichia coli, GI1788690, Length=401, Percent_Identity=33.9152119700748, Blast_Score=228, Evalue=4e-61,
Organism=Escherichia coli, GI145693166, Length=404, Percent_Identity=35.1485148514851, Blast_Score=228, Evalue=5e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47897; Mature: 47765

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEIS
CCCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEEEECCCHHEEEECCCCCCC
LADARARRDEARKLLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSAR
HHHHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
VLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMSGRLEVASRLQQRTTAIMRYAVQSG
HHHHHHHHHHHHHCCCCCHHCCCHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
LIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEEC
SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLVPLSRQALAILGKIKS
CCCCEEECCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHC
MSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSR
CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEHHHCCCHHHHHHHHHHHHCCCCH
DAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADDLDANRQQAISPFDYAKVNNLF
HHHHHHHHHHHHHCHHHHHHHHHHHHCCHHEEEEEECCHHCCCHHHCCCCHHHHHHHHCC
K
C
>Mature Secondary Structure 
ALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEIS
CCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEEEECCCHHEEEECCCCCCC
LADARARRDEARKLLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSAR
HHHHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
VLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMSGRLEVASRLQQRTTAIMRYAVQSG
HHHHHHHHHHHHHCCCCCHHCCCHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
LIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEEC
SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLVPLSRQALAILGKIKS
CCCCEEECCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHC
MSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSR
CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEHHHCCCHHHHHHHHHHHHCCCCH
DAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADDLDANRQQAISPFDYAKVNNLF
HHHHHHHHHHHHHCHHHHHHHHHHHHCCHHEEEEEECCHHCCCHHHCCCCHHHHHHHHCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]