| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is hsdM [H]
Identifier: 170025887
GI number: 170025887
Start: 4052306
End: 4055038
Strand: Direct
Name: hsdM [H]
Synonym: YPK_3672
Alternate gene names: 170025887
Gene position: 4052306-4055038 (Clockwise)
Preceding gene: 170025886
Following gene: 170025888
Centisome position: 86.41
GC content: 45.77
Gene sequence:
>2733_bases TTGGTAGGAATCGAGACTGTAGACTCCTCATTTACCCAGACTCGTAAAGCCTTGCCGCTAGCAAGAAGCTCTTATCAAAC GTACAATCAAAACCCTAAAATAGCCCTTTCCAAAAAAGAATTGCTTTTAACAGGACTCATTGTGAATAAACAACAGCTTG CGGCAAAAATCTGGGAATCCGCTAACCAGATGCGTTCTAAAATTGAAGCCAACGAATATAAAGATTACATACTCGGCTTT ATCTTCTACAAATACCTAAGCGACCAGTTGGTGCAGTTTGTCACCAGACAGGGTATGACGCCCGAAGATATCAAAGCCCT CAATGAAGAAGACGCCGACACCGTTAAATACGTGCAAGACAACCTGGGCTACTTTATTGCCTACGATAATTTGTTTTCTA CCTGGGTTGATTCCACATCCGACTTTGATGAATCTAACGTGCGAGATGCGCTCTCGGCCTTTAGCCGTTTGATTTCGCCA ACTTACAAAAAACTGTTTGAAGGCATTTTTACCACCTTAGAAACCGGTTTAAGCAAACTGGGTGAAAGTGCTGGCAAACG CACCAAAGCCATCAGCGACTTACTGCACCTGATCAAAAGCATCCCCATGAATGGTAATCAAGGGTATGACGTACTGGGCT ACATTTACGAATACCTGCTTGAGAAATTTGCCGCCAATGCGGGTAAAAAAGCCGGTGAGTTTTACACGCCTCATGAAGTC TCAGTGCTCATGTCGAACATCATCGCCCACGAGTTAAAACACAAAGATACCATCAAAATTTACGACCCGACCTCCGGCTC TGGTTCGTTGCTGATCAATATCGGTGAGGCGTTCGAGAAATACGCTAAAAACAAAGACAGCATCACCTATTACGCCCAAG AGTTAAAAGCCAATACCTACAACCTAACCCGTATGAACCTCATCATGCGCGGTATCAAAGCCAGCAACATTAAAACCCGT AATGGCGACACCCTGGAAGAAGATTGGCCGTATTTTGATGACAGTGATCCACTAGGATCATATTACGCGTTGCATGTCGA TGCCGTGGTGTCCAACCCGCCATACTCACAAAACTGGGACCCCAGCTTTAAAGACAGCGATCCACGCTATTCACGTTTTG GCCTGGCACCTAAAACCAAAGCCGATTTTGCTTTTTTGTTGCACGACCTCTACCACCTAAAACCCGATGGCATTATGGCC ATTGTTCTGCCCCATGGGGTCTTGTTCCGTGGCGGTGAAGAAGGTCAAATTCGCAAGCAACTCATTGAACAGAATCATAT TGATACTGTTATCGGTTTACCAGCTAATATCTTTTTTGGCACCGGCATTCCCACGGTGATTTTGATACTCAAGCAAAAAC GCCAAAACACCGATGTATTGGTGGTCGATGCCTCCAAACACTTTATGAAAGAAGGCAAAAACAACAAACTGCAAGCCAGT GATATCAAACGCATTACTGATGCGGTGATTAACCGCGAAAGTATCGATAAGTTCTCGCAACTGGTGAGCAAACAAACCCT GCGCGACAACGGCTACAATCTCAACATACCGCGCTATGTGGATTCCTCTGCGGCGGCACCAAGCTGGGATTTACACGCCA CCATGCTCGGCGGCATCCCCAACAGCGAAATTGCCGAGCTACACAATTTTTGGCAAGCCTTCCCACAATTGCACAGTACT CTGTTTACGCCAAAATCCGCCGCTTACAGTGAGCTGGTCATTGCCAAACAAGACGTCAACGCCAGCATTAGTGGGCACCC GCAAGTGTTAGAGTTTATCAGCGCCTACAACCAAGCCTTTAATGGCTTTGATGATTACCTAAACACCCAGTTAATACAAA ACTGGCAAAGCGTAAAGCGTAACCAACAAGAGGCGATATTAAGTACCGAGCTATTTACTCGCTTAGCCCCGATTGCCCTC ATCGACAAATACCAGGCTTACCAATTTCTAAACAACCAATGGCAACTCATCAGCGCCGATTTAGAGATGATGCAAACCGA AGGCTTTGCCGCCACCAAACAAGTTGATGCCAATATTGTTATAAAGAAAAAAAATGGCCAAGACACTGAAGTGCAAGACG GCTGGAAAGGCCACATACTGCCGTTTGATTTAGTGCAACAAACTGACTTAAGTGATGACTTACAAGCTCTGGCCGCTAAA GAAACCCGCTTGGCAGAAATCGCCAGCATGCTGGAAGAAATTTTAGAATCCCTAACCGAAGAAGAAAAAGAACAAGATAC GGTCAAAGAAAGCCAAGACGGCTTTGCCAATGCCGAATTAAGCAAGGCTGCTAAAGCCTTCTTGAAAGAACAAAAAGACA GCAAAGTTAAATTCGCAGAAGACAGCTATGAAGCCAAAATTATTCGCGCGAACAAATTAATCGATGAAGAAAAGGCCCTG AAAAAAACCGTCAAAGATGCCGCCACTGCCCTGCACTTAAAAACCAAAACGACCATCGAAACATTCACTGATGAACAGGT GAGCAACCTACTGCACCTTAAATGGATTGCGCCATTAAGCACCGAACTCGCTGCTATGCCAAGCACCGTGATTAGCCAGC TCACCAGCCAAGTGCAAGCCCTTGCTGATAAATATGCCGTCACTTACTCGCAAGTGGCCAATGAGATAAAAAGCACCGAG CAAGAACTGGCGCAGATGATGAGCGAGCTCACCGGTAATGAGTTTGATATGCAGGGCTTGGCAGAGCTCACCCGCTTACT GAAGGGGGAATAA
Upstream 100 bases:
>100_bases AGGATGATGTGGGCGGGGGATGTGTCCAATATATAGTGACTAAGCCAGTTGGAATGAGCCAGTCCAAAACATCGAAGCTG TCGCAGCTGAAGAGGCTGTC
Downstream 100 bases:
>100_bases GATGAGTGTGAATAATAAGGTGCCAGAGATTCGCTTTAAAGGGTTTGGTGGGGAATGGGAGGATAAGGTATTAGGTGAAT TAGCTGAAATTGTTCGTGGC
Product: type I restriction-modification system, M subunit
Products: NA
Alternate protein names: M.EcoR124II [H]
Number of amino acids: Translated: 910; Mature: 910
Protein sequence:
>910_residues MVGIETVDSSFTQTRKALPLARSSYQTYNQNPKIALSKKELLLTGLIVNKQQLAAKIWESANQMRSKIEANEYKDYILGF IFYKYLSDQLVQFVTRQGMTPEDIKALNEEDADTVKYVQDNLGYFIAYDNLFSTWVDSTSDFDESNVRDALSAFSRLISP TYKKLFEGIFTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNGNQGYDVLGYIYEYLLEKFAANAGKKAGEFYTPHEV SVLMSNIIAHELKHKDTIKIYDPTSGSGSLLINIGEAFEKYAKNKDSITYYAQELKANTYNLTRMNLIMRGIKASNIKTR NGDTLEEDWPYFDDSDPLGSYYALHVDAVVSNPPYSQNWDPSFKDSDPRYSRFGLAPKTKADFAFLLHDLYHLKPDGIMA IVLPHGVLFRGGEEGQIRKQLIEQNHIDTVIGLPANIFFGTGIPTVILILKQKRQNTDVLVVDASKHFMKEGKNNKLQAS DIKRITDAVINRESIDKFSQLVSKQTLRDNGYNLNIPRYVDSSAAAPSWDLHATMLGGIPNSEIAELHNFWQAFPQLHST LFTPKSAAYSELVIAKQDVNASISGHPQVLEFISAYNQAFNGFDDYLNTQLIQNWQSVKRNQQEAILSTELFTRLAPIAL IDKYQAYQFLNNQWQLISADLEMMQTEGFAATKQVDANIVIKKKNGQDTEVQDGWKGHILPFDLVQQTDLSDDLQALAAK ETRLAEIASMLEEILESLTEEEKEQDTVKESQDGFANAELSKAAKAFLKEQKDSKVKFAEDSYEAKIIRANKLIDEEKAL KKTVKDAATALHLKTKTTIETFTDEQVSNLLHLKWIAPLSTELAAMPSTVISQLTSQVQALADKYAVTYSQVANEIKSTE QELAQMMSELTGNEFDMQGLAELTRLLKGE
Sequences:
>Translated_910_residues MVGIETVDSSFTQTRKALPLARSSYQTYNQNPKIALSKKELLLTGLIVNKQQLAAKIWESANQMRSKIEANEYKDYILGF IFYKYLSDQLVQFVTRQGMTPEDIKALNEEDADTVKYVQDNLGYFIAYDNLFSTWVDSTSDFDESNVRDALSAFSRLISP TYKKLFEGIFTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNGNQGYDVLGYIYEYLLEKFAANAGKKAGEFYTPHEV SVLMSNIIAHELKHKDTIKIYDPTSGSGSLLINIGEAFEKYAKNKDSITYYAQELKANTYNLTRMNLIMRGIKASNIKTR NGDTLEEDWPYFDDSDPLGSYYALHVDAVVSNPPYSQNWDPSFKDSDPRYSRFGLAPKTKADFAFLLHDLYHLKPDGIMA IVLPHGVLFRGGEEGQIRKQLIEQNHIDTVIGLPANIFFGTGIPTVILILKQKRQNTDVLVVDASKHFMKEGKNNKLQAS DIKRITDAVINRESIDKFSQLVSKQTLRDNGYNLNIPRYVDSSAAAPSWDLHATMLGGIPNSEIAELHNFWQAFPQLHST LFTPKSAAYSELVIAKQDVNASISGHPQVLEFISAYNQAFNGFDDYLNTQLIQNWQSVKRNQQEAILSTELFTRLAPIAL IDKYQAYQFLNNQWQLISADLEMMQTEGFAATKQVDANIVIKKKNGQDTEVQDGWKGHILPFDLVQQTDLSDDLQALAAK ETRLAEIASMLEEILESLTEEEKEQDTVKESQDGFANAELSKAAKAFLKEQKDSKVKFAEDSYEAKIIRANKLIDEEKAL KKTVKDAATALHLKTKTTIETFTDEQVSNLLHLKWIAPLSTELAAMPSTVISQLTSQVQALADKYAVTYSQVANEIKSTE QELAQMMSELTGNEFDMQGLAELTRLLKGE >Mature_910_residues MVGIETVDSSFTQTRKALPLARSSYQTYNQNPKIALSKKELLLTGLIVNKQQLAAKIWESANQMRSKIEANEYKDYILGF IFYKYLSDQLVQFVTRQGMTPEDIKALNEEDADTVKYVQDNLGYFIAYDNLFSTWVDSTSDFDESNVRDALSAFSRLISP TYKKLFEGIFTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNGNQGYDVLGYIYEYLLEKFAANAGKKAGEFYTPHEV SVLMSNIIAHELKHKDTIKIYDPTSGSGSLLINIGEAFEKYAKNKDSITYYAQELKANTYNLTRMNLIMRGIKASNIKTR NGDTLEEDWPYFDDSDPLGSYYALHVDAVVSNPPYSQNWDPSFKDSDPRYSRFGLAPKTKADFAFLLHDLYHLKPDGIMA IVLPHGVLFRGGEEGQIRKQLIEQNHIDTVIGLPANIFFGTGIPTVILILKQKRQNTDVLVVDASKHFMKEGKNNKLQAS DIKRITDAVINRESIDKFSQLVSKQTLRDNGYNLNIPRYVDSSAAAPSWDLHATMLGGIPNSEIAELHNFWQAFPQLHST LFTPKSAAYSELVIAKQDVNASISGHPQVLEFISAYNQAFNGFDDYLNTQLIQNWQSVKRNQQEAILSTELFTRLAPIAL IDKYQAYQFLNNQWQLISADLEMMQTEGFAATKQVDANIVIKKKNGQDTEVQDGWKGHILPFDLVQQTDLSDDLQALAAK ETRLAEIASMLEEILESLTEEEKEQDTVKESQDGFANAELSKAAKAFLKEQKDSKVKFAEDSYEAKIIRANKLIDEEKAL KKTVKDAATALHLKTKTTIETFTDEQVSNLLHLKWIAPLSTELAAMPSTVISQLTSQVQALADKYAVTYSQVANEIKSTE QELAQMMSELTGNEFDMQGLAELTRLLKGE
Specific function: Methylation of specific adenine residues; required for both restriction and modification activities. The EcoR124/3 I enzyme recognizes 5'-GAAN(7)RTCG-3' [H]
COG id: COG0286
COG function: function code V; Type I restriction-modification system methyltransferase subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1790808, Length=337, Percent_Identity=25.8160237388724, Blast_Score=94, Evalue=3e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022749 - InterPro: IPR003356 - InterPro: IPR002052 - InterPro: IPR002296 - InterPro: IPR004546 [H]
Pfam domain/function: PF12161 HsdM_N; PF02384 N6_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 102391; Mature: 102391
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVGIETVDSSFTQTRKALPLARSSYQTYNQNPKIALSKKELLLTGLIVNKQQLAAKIWES CCCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHH ANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTPEDIKALNEEDADTVKYVQD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHH NLGYFIAYDNLFSTWVDSTSDFDESNVRDALSAFSRLISPTYKKLFEGIFTTLETGLSKL CCCEEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH GESAGKRTKAISDLLHLIKSIPMNGNQGYDVLGYIYEYLLEKFAANAGKKAGEFYTPHEV HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH SVLMSNIIAHELKHKDTIKIYDPTSGSGSLLINIGEAFEKYAKNKDSITYYAQELKANTY HHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEHHHHHHHHHCCCCCHHHHHHHHCCCCC NLTRMNLIMRGIKASNIKTRNGDTLEEDWPYFDDSDPLGSYYALHVDAVVSNPPYSQNWD CHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCC PSFKDSDPRYSRFGLAPKTKADFAFLLHDLYHLKPDGIMAIVLPHGVLFRGGEEGQIRKQ CCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCHHHHH LIEQNHIDTVIGLPANIFFGTGIPTVILILKQKRQNTDVLVVDASKHFMKEGKNNKLQAS HHHHCCCCHHHCCCCHHEECCCHHHHHHHHHHCCCCCCEEEEECHHHHHHCCCCCCCCHH DIKRITDAVINRESIDKFSQLVSKQTLRDNGYNLNIPRYVDSSAAAPSWDLHATMLGGIP HHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC NSEIAELHNFWQAFPQLHSTLFTPKSAAYSELVIAKQDVNASISGHPQVLEFISAYNQAF CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHH NGFDDYLNTQLIQNWQSVKRNQQEAILSTELFTRLAPIALIDKYQAYQFLNNQWQLISAD CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHH LEMMQTEGFAATKQVDANIVIKKKNGQDTEVQDGWKGHILPFDLVQQTDLSDDLQALAAK HHHHHHCCCCHHEECCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHH ETRLAEIASMLEEILESLTEEEKEQDTVKESQDGFANAELSKAAKAFLKEQKDSKVKFAE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEECC DSYEAKIIRANKLIDEEKALKKTVKDAATALHLKTKTTIETFTDEQVSNLLHLKWIAPLS CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHEECCHH TELAAMPSTVISQLTSQVQALADKYAVTYSQVANEIKSTEQELAQMMSELTGNEFDMQGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH AELTRLLKGE HHHHHHHCCC >Mature Secondary Structure MVGIETVDSSFTQTRKALPLARSSYQTYNQNPKIALSKKELLLTGLIVNKQQLAAKIWES CCCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHH ANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTPEDIKALNEEDADTVKYVQD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHH NLGYFIAYDNLFSTWVDSTSDFDESNVRDALSAFSRLISPTYKKLFEGIFTTLETGLSKL CCCEEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH GESAGKRTKAISDLLHLIKSIPMNGNQGYDVLGYIYEYLLEKFAANAGKKAGEFYTPHEV HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH SVLMSNIIAHELKHKDTIKIYDPTSGSGSLLINIGEAFEKYAKNKDSITYYAQELKANTY HHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEHHHHHHHHHCCCCCHHHHHHHHCCCCC NLTRMNLIMRGIKASNIKTRNGDTLEEDWPYFDDSDPLGSYYALHVDAVVSNPPYSQNWD CHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCC PSFKDSDPRYSRFGLAPKTKADFAFLLHDLYHLKPDGIMAIVLPHGVLFRGGEEGQIRKQ CCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCHHHHH LIEQNHIDTVIGLPANIFFGTGIPTVILILKQKRQNTDVLVVDASKHFMKEGKNNKLQAS HHHHCCCCHHHCCCCHHEECCCHHHHHHHHHHCCCCCCEEEEECHHHHHHCCCCCCCCHH DIKRITDAVINRESIDKFSQLVSKQTLRDNGYNLNIPRYVDSSAAAPSWDLHATMLGGIP HHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC NSEIAELHNFWQAFPQLHSTLFTPKSAAYSELVIAKQDVNASISGHPQVLEFISAYNQAF CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHH NGFDDYLNTQLIQNWQSVKRNQQEAILSTELFTRLAPIALIDKYQAYQFLNNQWQLISAD CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHH LEMMQTEGFAATKQVDANIVIKKKNGQDTEVQDGWKGHILPFDLVQQTDLSDDLQALAAK HHHHHHCCCCHHEECCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHH ETRLAEIASMLEEILESLTEEEKEQDTVKESQDGFANAELSKAAKAFLKEQKDSKVKFAE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEECC DSYEAKIIRANKLIDEEKALKKTVKDAATALHLKTKTTIETFTDEQVSNLLHLKWIAPLS CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHEECCHH TELAAMPSTVISQLTSQVQALADKYAVTYSQVANEIKSTEQELAQMMSELTGNEFDMQGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH AELTRLLKGE HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2784505 [H]