| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is 170025877
Identifier: 170025877
GI number: 170025877
Start: 4042738
End: 4043274
Strand: Reverse
Name: 170025877
Synonym: YPK_3662
Alternate gene names: NA
Gene position: 4043274-4042738 (Counterclockwise)
Preceding gene: 170025882
Following gene: 170025876
Centisome position: 86.22
GC content: 41.15
Gene sequence:
>537_bases ATGCCGATTCCTGAGCGTTTAACACCAGGCAAAGCCACTAAAAATCGGACACAGAGACTGCTTAAGTTACTCGACGAGAT ATCCAGTACACTTGAGGATAATGGTGATCAAGAAAACGAGCGGGTACGAGAGCTCATTTTACAATGGAATGAAATTGCCT GCCGAGAACATGATTTCCATGAGTTTAGGGATTTTCACGCCTATACCAGCAAAGATGACTTTATTATTTCAGCCCAGAGA AAAGCTAAATATATCGAAGATTTCCAATATATTGAGTCAATTGAACTGGTCAATGTTATCGCACAAGCTGAAGGTACCGA ACCCGATATACATTATGCGGTCGATCTTTTGGATAAGAATTTTCCTGATGGCGATGCTTCAGATCTTATATTCTGGCCTA ACTATTGGTTTCAGGATGAAAATATGCTCCACATTGAACTCACTCCAGAAGAAACTGTGGGCTATCTTATGGCTCGCTCA GGGAGAACGTTGCAAGGCGCTCCAGAGATTGAATTAAGATACCCCTATTATAACTAA
Upstream 100 bases:
>100_bases AGAAGGGGTGATCTTTGTCTTCTTTTCGGCGTAACATGCGCTTGATGGTAGATCCCGACAGAGGATAACGTGTCGGATAA AATCTTTTTAAGGAGAAAAC
Downstream 100 bases:
>100_bases AATGACGATTAAACTTATCAGTCAACTGACGGCTCTGGTATCAGAGCCGAATAGTATTCACCATGTCTATTTTGCTAAAA GCCTACGCGCCGCACCATTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 178; Mature: 177
Protein sequence:
>178_residues MPIPERLTPGKATKNRTQRLLKLLDEISSTLEDNGDQENERVRELILQWNEIACREHDFHEFRDFHAYTSKDDFIISAQR KAKYIEDFQYIESIELVNVIAQAEGTEPDIHYAVDLLDKNFPDGDASDLIFWPNYWFQDENMLHIELTPEETVGYLMARS GRTLQGAPEIELRYPYYN
Sequences:
>Translated_178_residues MPIPERLTPGKATKNRTQRLLKLLDEISSTLEDNGDQENERVRELILQWNEIACREHDFHEFRDFHAYTSKDDFIISAQR KAKYIEDFQYIESIELVNVIAQAEGTEPDIHYAVDLLDKNFPDGDASDLIFWPNYWFQDENMLHIELTPEETVGYLMARS GRTLQGAPEIELRYPYYN >Mature_177_residues PIPERLTPGKATKNRTQRLLKLLDEISSTLEDNGDQENERVRELILQWNEIACREHDFHEFRDFHAYTSKDDFIISAQRK AKYIEDFQYIESIELVNVIAQAEGTEPDIHYAVDLLDKNFPDGDASDLIFWPNYWFQDENMLHIELTPEETVGYLMARSG RTLQGAPEIELRYPYYN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20960; Mature: 20828
Theoretical pI: Translated: 4.31; Mature: 4.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIPERLTPGKATKNRTQRLLKLLDEISSTLEDNGDQENERVRELILQWNEIACREHDFH CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHH EFRDFHAYTSKDDFIISAQRKAKYIEDFQYIESIELVNVIAQAEGTEPDIHYAVDLLDKN HHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC FPDGDASDLIFWPNYWFQDENMLHIELTPEETVGYLMARSGRTLQGAPEIELRYPYYN CCCCCCCCEEECCCCEECCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCEEEECCCCC >Mature Secondary Structure PIPERLTPGKATKNRTQRLLKLLDEISSTLEDNGDQENERVRELILQWNEIACREHDFH CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHH EFRDFHAYTSKDDFIISAQRKAKYIEDFQYIESIELVNVIAQAEGTEPDIHYAVDLLDKN HHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC FPDGDASDLIFWPNYWFQDENMLHIELTPEETVGYLMARSGRTLQGAPEIELRYPYYN CCCCCCCCEEECCCCEECCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA