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The map label for this gene is dapB [H]

Identifier: 170025799

GI number: 170025799

Start: 3949696

End: 3950517

Strand: Reverse

Name: dapB [H]

Synonym: YPK_3584

Alternate gene names: 170025799

Gene position: 3950517-3949696 (Counterclockwise)

Preceding gene: 170025800

Following gene: 170025798

Centisome position: 84.24

GC content: 50.0

Gene sequence:

>822_bases
ATGACTGATTCAACAATTCGTATTGCTATTGTCGGCGCGGGTGGACGGATGGGGCGGCAATTAATTCAAGCCGTTACGCA
GATGGAAGGCGTTGTCTTAGGGGCGGCTATCGAGCGTAAAGGGTCCACGTTGGTAGGCAGTGATGCGGGTGAGCTGGCGG
GTGTTGGCTTGTTAAATGTCATTGTTGGCGATGATTTATCCCAACTTACTGATAATTTTGACGTACTGATCGACTTTACC
CGCCCAGAAGGTACGTTGGAACATTTAGCTATTTGCCGTCAGCATCGGAAAGCGATGGTGATTGGTACCACGGGTTTTGA
TGAGGCAGGTAAAGCGGCCATTAGTGAGGCTGCGGCAGACATTGGTATTGTATTCGCAGCGAACTTCAGTGTTGGGGTGA
ATGTGGTACTGAAATTGCTGGAAAAGGCGGCGAAAGTCATGGGCGATTATACCGATATTGAAATTATCGAAGCCCATCAC
CGCCACAAAGTGGATGCACCATCAGGAACGGCGCTGGCAATGGGTGAGGCGATTGCTGATGCTATGGGGCGCTCCTTGAA
AGATTGTGCAGTTTATAGCCGTGAAGGCTATACCGGTGAGCGTAAACCGGGGACCATCGGTTTCGCGACCGTGCGTGCTG
GCGATATTGTGGGTGAACACACGGCAATGTTTGCTGATATCGGCGAACGGGTTGAGATCACTCACAAAGCGACGAGCCGG
ATGACTTTTGCCAATGGTGCGGTTAAGTCTGCCATTTGGCTTGGTAAGCATGATAATGGCTTGTTTGATATGCGTGATGT
ACTGAATCTTAACGAACTTTAA

Upstream 100 bases:

>100_bases
ATCATTTTTTTCTAATACAGATTAAATAGGCTGGTAGAGTCAATAGCCGGCGGCTAATCTGAACCCTGGTCAGGGTAGAG
GACACATTTTAAGGGGACGT

Downstream 100 bases:

>100_bases
TGCTTTAAATTACAACCAGTGATGTGGTTGTTTTTATCATAATCATTTGATAATAGGGCAATATTTTATTGTCCTTTTTT
ATTTTAAATTTAAAATAAGC

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MTDSTIRIAIVGAGGRMGRQLIQAVTQMEGVVLGAAIERKGSTLVGSDAGELAGVGLLNVIVGDDLSQLTDNFDVLIDFT
RPEGTLEHLAICRQHRKAMVIGTTGFDEAGKAAISEAAADIGIVFAANFSVGVNVVLKLLEKAAKVMGDYTDIEIIEAHH
RHKVDAPSGTALAMGEAIADAMGRSLKDCAVYSREGYTGERKPGTIGFATVRAGDIVGEHTAMFADIGERVEITHKATSR
MTFANGAVKSAIWLGKHDNGLFDMRDVLNLNEL

Sequences:

>Translated_273_residues
MTDSTIRIAIVGAGGRMGRQLIQAVTQMEGVVLGAAIERKGSTLVGSDAGELAGVGLLNVIVGDDLSQLTDNFDVLIDFT
RPEGTLEHLAICRQHRKAMVIGTTGFDEAGKAAISEAAADIGIVFAANFSVGVNVVLKLLEKAAKVMGDYTDIEIIEAHH
RHKVDAPSGTALAMGEAIADAMGRSLKDCAVYSREGYTGERKPGTIGFATVRAGDIVGEHTAMFADIGERVEITHKATSR
MTFANGAVKSAIWLGKHDNGLFDMRDVLNLNEL
>Mature_272_residues
TDSTIRIAIVGAGGRMGRQLIQAVTQMEGVVLGAAIERKGSTLVGSDAGELAGVGLLNVIVGDDLSQLTDNFDVLIDFTR
PEGTLEHLAICRQHRKAMVIGTTGFDEAGKAAISEAAADIGIVFAANFSVGVNVVLKLLEKAAKVMGDYTDIEIIEAHHR
HKVDAPSGTALAMGEAIADAMGRSLKDCAVYSREGYTGERKPGTIGFATVRAGDIVGEHTAMFADIGERVEITHKATSRM
TFANGAVKSAIWLGKHDNGLFDMRDVLNLNEL

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=273, Percent_Identity=79.8534798534799, Blast_Score=424, Evalue=1e-120,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 28865; Mature: 28734

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDSTIRIAIVGAGGRMGRQLIQAVTQMEGVVLGAAIERKGSTLVGSDAGELAGVGLLNV
CCCCEEEEEEEECCCHHHHHHHHHHHHHCCEEEEEEHHCCCCEEECCCCCHHHHHHHEEE
IVGDDLSQLTDNFDVLIDFTRPEGTLEHLAICRQHRKAMVIGTTGFDEAGKAAISEAAAD
ECCCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHC
IGIVFAANFSVGVNVVLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAD
EEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHH
AMGRSLKDCAVYSREGYTGERKPGTIGFATVRAGDIVGEHTAMFADIGERVEITHKATSR
HHCCCHHHHHHCCCCCCCCCCCCCCEEEEEEECCCHHCHHHHHHHHCCCEEEEEEHHHHH
MTFANGAVKSAIWLGKHDNGLFDMRDVLNLNEL
EEECCCCHHHEEEECCCCCCCCHHHHHHCCCCC
>Mature Secondary Structure 
TDSTIRIAIVGAGGRMGRQLIQAVTQMEGVVLGAAIERKGSTLVGSDAGELAGVGLLNV
CCCEEEEEEEECCCHHHHHHHHHHHHHCCEEEEEEHHCCCCEEECCCCCHHHHHHHEEE
IVGDDLSQLTDNFDVLIDFTRPEGTLEHLAICRQHRKAMVIGTTGFDEAGKAAISEAAAD
ECCCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHC
IGIVFAANFSVGVNVVLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAD
EEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHH
AMGRSLKDCAVYSREGYTGERKPGTIGFATVRAGDIVGEHTAMFADIGERVEITHKATSR
HHCCCHHHHHHCCCCCCCCCCCCCCEEEEEEECCCHHCHHHHHHHHCCCEEEEEEHHHHH
MTFANGAVKSAIWLGKHDNGLFDMRDVLNLNEL
EEECCCCHHHEEEECCCCCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA