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The map label for this gene is yabI [H]

Identifier: 170025760

GI number: 170025760

Start: 3898380

End: 3899147

Strand: Reverse

Name: yabI [H]

Synonym: YPK_3545

Alternate gene names: 170025760

Gene position: 3899147-3898380 (Counterclockwise)

Preceding gene: 170025763

Following gene: 170025756

Centisome position: 83.15

GC content: 50.52

Gene sequence:

>768_bases
ATGGAAGCCTATTTATTACATTTATTGACGCAATCCCTGGCTTTCACGCTATTTATCGTCATGTTAGTCACTTTTCTCGA
ATCTTTAGCGCTGGTGGGCATGTTATTACCGGGAACGGTGATGATGACCAGCGTGGGCGCGCTGATTGGCAGTGGCGAAG
TGGATTTTTATTTCGCCTGGGTTGCCGCGACCCTCGGTTGCCTGTTAGGGGATTGGATATCGTATTTCATTGGCCGCCGT
TTCAAAGCGCCGCTACACAATTGGTCTTTCCTACAAAAACATAAATCGTTGCTGAATAAAACTGAGCATGCATTACATAA
CCACAGCATGGCAACGGTACTCTTGGGGCGTTTTATTGGCCCGACACGGCCCATCGTACCCATGGTGGCTGGGATGCTGA
ACTTGCCAACGGCAAAGTTTGCCTTACCCAGTGTGATTGGTGGCCTGACATGGCCGCCGATTTATCTCTTCCCCGGTATA
TTGGCAGGGGTTGCCATCGATATCCCGCCGAGCAGTAATAGCTTTATGTTTAAGTGCCTACTGTTTGTGGTGGTGGTACT
GATTTGGCTGTCGTTGTGGTTATCATGGCGCTGGTGGCGTTTTGGTAAGCGCAGCCCAGATCGCCTGAGTGTGTGGCTCC
CCTTGGCCCGCTTGCGTTGGGTGACGCTGTTAACTATTGCGGCCGCTATCGCCAGTTTTATCTGGCTACATATGCAACCA
CTGATGCCAATCTATCGCCATCTGTTGTGGAAAGTCTTGGCTGGGTAA

Upstream 100 bases:

>100_bases
AAATTGAAATCTATTTACGCAAATCGCTGATTGACTCATTTTACGTTGCGCTGGACAATCCTCGCGCCTCAGTTCTGAGT
GCTAACTAACGGACAACTTT

Downstream 100 bases:

>100_bases
ACCCGGACACGGTGGCTGACAGCCCTATTTTATCGTGTATCAGCCGCCGGGGTTACCGCCGCGAGGGATCAAGATATAAC
GGCACTTTTGATACCCAGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MEAYLLHLLTQSLAFTLFIVMLVTFLESLALVGMLLPGTVMMTSVGALIGSGEVDFYFAWVAATLGCLLGDWISYFIGRR
FKAPLHNWSFLQKHKSLLNKTEHALHNHSMATVLLGRFIGPTRPIVPMVAGMLNLPTAKFALPSVIGGLTWPPIYLFPGI
LAGVAIDIPPSSNSFMFKCLLFVVVVLIWLSLWLSWRWWRFGKRSPDRLSVWLPLARLRWVTLLTIAAAIASFIWLHMQP
LMPIYRHLLWKVLAG

Sequences:

>Translated_255_residues
MEAYLLHLLTQSLAFTLFIVMLVTFLESLALVGMLLPGTVMMTSVGALIGSGEVDFYFAWVAATLGCLLGDWISYFIGRR
FKAPLHNWSFLQKHKSLLNKTEHALHNHSMATVLLGRFIGPTRPIVPMVAGMLNLPTAKFALPSVIGGLTWPPIYLFPGI
LAGVAIDIPPSSNSFMFKCLLFVVVVLIWLSLWLSWRWWRFGKRSPDRLSVWLPLARLRWVTLLTIAAAIASFIWLHMQP
LMPIYRHLLWKVLAG
>Mature_255_residues
MEAYLLHLLTQSLAFTLFIVMLVTFLESLALVGMLLPGTVMMTSVGALIGSGEVDFYFAWVAATLGCLLGDWISYFIGRR
FKAPLHNWSFLQKHKSLLNKTEHALHNHSMATVLLGRFIGPTRPIVPMVAGMLNLPTAKFALPSVIGGLTWPPIYLFPGI
LAGVAIDIPPSSNSFMFKCLLFVVVVLIWLSLWLSWRWWRFGKRSPDRLSVWLPLARLRWVTLLTIAAAIASFIWLHMQP
LMPIYRHLLWKVLAG

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1786252, Length=254, Percent_Identity=58.2677165354331, Blast_Score=292, Evalue=1e-80,
Organism=Escherichia coli, GI1789481, Length=153, Percent_Identity=32.6797385620915, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788656, Length=166, Percent_Identity=28.3132530120482, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 28742; Mature: 28742

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1630901; 9278503 [H]