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The map label for this gene is yadE [H]

Identifier: 170025690

GI number: 170025690

Start: 3817006

End: 3818319

Strand: Reverse

Name: yadE [H]

Synonym: YPK_3475

Alternate gene names: 170025690

Gene position: 3818319-3817006 (Counterclockwise)

Preceding gene: 170025691

Following gene: 170025680

Centisome position: 81.42

GC content: 43.38

Gene sequence:

>1314_bases
ATGTGGCATAAAAACAGAATAGCTATTGGGATGCTACTCAGCATTGTCATGTGGGTAATAATGATACCGACAACCCAGGC
TGACCTCTTGCCAAATGTGGAGGTCACACCACCAAAATATATGATGACCGAACGCGATAGCGAAGTTTATTCGTTGGTTG
GTGAACATGTTATTCCCGTCGGAGAAATCAAAGAAGGCCAGTTGATTCAGGTGACGCCAGTTATTGCTGAATACTATGAG
TTTAAGTTTGGCAACGGTACCGGTTTTATTGATAAAGATGATTTACGTGAGATTAATAAAGCACAAAAAAACAACGACAT
GTTGGGCGATTTAAATAAGCCCTTACCGAATCAAAATATACTGACGATGCGTGAGGCTAAGGTTTATTTGGCTGCGGATG
TGCGCAGTGAACAATTTGCTGTTCTGGCCGAGAACTTACGTTATCCCCTTGTTGGAAAACTGAAAGATCGTTTAAGCAAT
ACTTGGTATCAGGTCAATATTGGTGATCGCTTGGGGTATGTCAGCAGCGCAGACGCTGAAATAGACAACGGTATTCCGAT
CCTGACTTACCATCACATGTTGAAGAACGAAGAAAATAAACGCTTCCTGAACACCTCAACCACCACATCTGATGTGGCGT
TCAGTAATCAAATGGCTTACCTCAAACAGGCGGGCTATGACACTATTTCTCTGTATCAGCTCGAAGGCTATCTGAATAAC
AAGATTAATCTGCCTGCGAAAGTTGTAGTGCTGACATTTGATGATGGTTTGAAGTCAGTGAGTCGCTATGCTTATCCTAT
TCTGAAAGAGAATGGTTTCCGCGCCACGGCGTTTATTATCTCTTCGCGTATTAAACGGCATCCACAAAAATGGAATCCAG
ATTCATTACAGTTTATGAGTATTGCTGAACTGAAAGGAATTCAAGATGTGTTTGATATACAGTCTCATACGCATTTTTTA
CACCGCACCGATAATAGACACCATCCCATATTATTGAGTCGCTCTTATCACAATATCATTTTTGATTTTGAACGCTCACG
TCGGGCATTAGCGCAGTTCAATCCGCATGTGATTTTTCTGTCATATCCCTTCGGGGGTTTTAATCAAACAGCGGTCAATG
CGGCGAAGAATGCCGGTTTTCATTTGGCGGTGACCACGATGCAAGGCAAGGTCAAGCCAGGCGATAATCCATATACCCTG
AAACGGCTCTATATTCTCCGTACTGACTCAATACCGACCATGGCGGAGCGCATAGCCAATCAACCCGGCTCGGTTGCGGT
AAAACCGGCACCCGCAGTGATTGAAATGGATTAA

Upstream 100 bases:

>100_bases
CCTGATAACCCCTTTTTCAACCCCAAGTCTCTCGTGATATGCTGGCGCACACTATTTCCCTTTTTCCATTCAGCGCCGAC
TGCGCATAAGTAGAACAAAC

Downstream 100 bases:

>100_bases
CGATGTTATGGCATAAGACGTTTATGGCATAAAAAGGAAGGGTGTTTTATTTAAGCGCCCGAGGTTAATCGCATTATTAT
GGCTATCTAGCCAGTGATCC

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MWHKNRIAIGMLLSIVMWVIMIPTTQADLLPNVEVTPPKYMMTERDSEVYSLVGEHVIPVGEIKEGQLIQVTPVIAEYYE
FKFGNGTGFIDKDDLREINKAQKNNDMLGDLNKPLPNQNILTMREAKVYLAADVRSEQFAVLAENLRYPLVGKLKDRLSN
TWYQVNIGDRLGYVSSADAEIDNGIPILTYHHMLKNEENKRFLNTSTTTSDVAFSNQMAYLKQAGYDTISLYQLEGYLNN
KINLPAKVVVLTFDDGLKSVSRYAYPILKENGFRATAFIISSRIKRHPQKWNPDSLQFMSIAELKGIQDVFDIQSHTHFL
HRTDNRHHPILLSRSYHNIIFDFERSRRALAQFNPHVIFLSYPFGGFNQTAVNAAKNAGFHLAVTTMQGKVKPGDNPYTL
KRLYILRTDSIPTMAERIANQPGSVAVKPAPAVIEMD

Sequences:

>Translated_437_residues
MWHKNRIAIGMLLSIVMWVIMIPTTQADLLPNVEVTPPKYMMTERDSEVYSLVGEHVIPVGEIKEGQLIQVTPVIAEYYE
FKFGNGTGFIDKDDLREINKAQKNNDMLGDLNKPLPNQNILTMREAKVYLAADVRSEQFAVLAENLRYPLVGKLKDRLSN
TWYQVNIGDRLGYVSSADAEIDNGIPILTYHHMLKNEENKRFLNTSTTTSDVAFSNQMAYLKQAGYDTISLYQLEGYLNN
KINLPAKVVVLTFDDGLKSVSRYAYPILKENGFRATAFIISSRIKRHPQKWNPDSLQFMSIAELKGIQDVFDIQSHTHFL
HRTDNRHHPILLSRSYHNIIFDFERSRRALAQFNPHVIFLSYPFGGFNQTAVNAAKNAGFHLAVTTMQGKVKPGDNPYTL
KRLYILRTDSIPTMAERIANQPGSVAVKPAPAVIEMD
>Mature_437_residues
MWHKNRIAIGMLLSIVMWVIMIPTTQADLLPNVEVTPPKYMMTERDSEVYSLVGEHVIPVGEIKEGQLIQVTPVIAEYYE
FKFGNGTGFIDKDDLREINKAQKNNDMLGDLNKPLPNQNILTMREAKVYLAADVRSEQFAVLAENLRYPLVGKLKDRLSN
TWYQVNIGDRLGYVSSADAEIDNGIPILTYHHMLKNEENKRFLNTSTTTSDVAFSNQMAYLKQAGYDTISLYQLEGYLNN
KINLPAKVVVLTFDDGLKSVSRYAYPILKENGFRATAFIISSRIKRHPQKWNPDSLQFMSIAELKGIQDVFDIQSHTHFL
HRTDNRHHPILLSRSYHNIIFDFERSRRALAQFNPHVIFLSYPFGGFNQTAVNAAKNAGFHLAVTTMQGKVKPGDNPYTL
KRLYILRTDSIPTMAERIANQPGSVAVKPAPAVIEMD

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786322, Length=386, Percent_Identity=65.0259067357513, Blast_Score=536, Evalue=1e-154,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 49653; Mature: 49653

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWHKNRIAIGMLLSIVMWVIMIPTTQADLLPNVEVTPPKYMMTERDSEVYSLVGEHVIPV
CCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCEECCCCHHHHHHHHHCCCCC
GEIKEGQLIQVTPVIAEYYEFKFGNGTGFIDKDDLREINKAQKNNDMLGDLNKPLPNQNI
CCCCCCCEEEEEHHHHHHHEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
LTMREAKVYLAADVRSEQFAVLAENLRYPLVGKLKDRLSNTWYQVNIGDRLGYVSSADAE
EEEEECEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
IDNGIPILTYHHMLKNEENKRFLNTSTTTSDVAFSNQMAYLKQAGYDTISLYQLEGYLNN
CCCCCEEEEEHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
KINLPAKVVVLTFDDGLKSVSRYAYPILKENGFRATAFIISSRIKRHPQKWNPDSLQFMS
CCCCCEEEEEEEECCHHHHHHHHHCHHHHCCCCEEHHHHHHHHHHHCCCCCCCCCEEEEE
IAELKGIQDVFDIQSHTHFLHRTDNRHHPILLSRSYHNIIFDFERSRRALAQFNPHVIFL
HHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEHHHHHHHHHCCCEEEEE
SYPFGGFNQTAVNAAKNAGFHLAVTTMQGKVKPGDNPYTLKRLYILRTDSIPTMAERIAN
ECCCCCCCHHHHHHHHCCCEEEEEEEEECEECCCCCCEEEEEEEEEEECCCHHHHHHHCC
QPGSVAVKPAPAVIEMD
CCCCEEECCCCEEEECC
>Mature Secondary Structure
MWHKNRIAIGMLLSIVMWVIMIPTTQADLLPNVEVTPPKYMMTERDSEVYSLVGEHVIPV
CCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCEECCCCHHHHHHHHHCCCCC
GEIKEGQLIQVTPVIAEYYEFKFGNGTGFIDKDDLREINKAQKNNDMLGDLNKPLPNQNI
CCCCCCCEEEEEHHHHHHHEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
LTMREAKVYLAADVRSEQFAVLAENLRYPLVGKLKDRLSNTWYQVNIGDRLGYVSSADAE
EEEEECEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
IDNGIPILTYHHMLKNEENKRFLNTSTTTSDVAFSNQMAYLKQAGYDTISLYQLEGYLNN
CCCCCEEEEEHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
KINLPAKVVVLTFDDGLKSVSRYAYPILKENGFRATAFIISSRIKRHPQKWNPDSLQFMS
CCCCCEEEEEEEECCHHHHHHHHHCHHHHCCCCEEHHHHHHHHHHHCCCCCCCCCEEEEE
IAELKGIQDVFDIQSHTHFLHRTDNRHHPILLSRSYHNIIFDFERSRRALAQFNPHVIFL
HHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEHHHHHHHHHCCCEEEEE
SYPFGGFNQTAVNAAKNAGFHLAVTTMQGKVKPGDNPYTLKRLYILRTDSIPTMAERIAN
ECCCCCCCHHHHHHHHCCCEEEEEEEEECEECCCCCCEEEEEEEEEEECCCHHHHHHHCC
QPGSVAVKPAPAVIEMD
CCCCEEECCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503 [H]