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The map label for this gene is sgbU [H]

Identifier: 170025617

GI number: 170025617

Start: 3733504

End: 3734385

Strand: Direct

Name: sgbU [H]

Synonym: YPK_3402

Alternate gene names: 170025617

Gene position: 3733504-3734385 (Clockwise)

Preceding gene: 170025616

Following gene: 170025618

Centisome position: 79.62

GC content: 54.88

Gene sequence:

>882_bases
ATGCGCATTCACCCACTAGGAATATACGAAAAAGCCCTACCTGCGGGCACCAGTTGGGTCGAAAAGCTGGCGGTAGCAAA
ATCCTGCGGCTTCGACTTTGTTGAAATGTCCGTTGATGAGAGTGATGAGCGGCTGGCTCGTCTGGATTGGAGCCGCGAGG
AGCGTATGGCGGTGATCAGTGCCATTCAACAGACCGGGGTGCGCATTCCAACCCTGTGCCTCTCGGCTCACCGCCGCTAT
CCATTCGGTAGCCGCGATGCCGCCACGCGGGAGCAAGCGCATACGGTCATGTTACAGGCTATCCGTCTGGCGCAGGATCT
TGGGATCCGTACCATTCAACTGGCAGGATACGATGTGTACTACGAACCGCAGGATAGTGAAACGATCGCACGTTTTGAAG
CGGGTATCGCCTGGGCGGTGAAGCAAGCCGCGGCAGCGCAAGTGATGTGTGCGGTCGAGATCATGGACACCCAGTTTATG
AACTCCATCAGCAAGTGGAAGGCGCTGGACAACAAGATTGGCTCTCCGTGGTTTACCGTCTACCCCGATATCGGCAACCT
CACGGCCTGGGGCAATGAAGTCAACAGTGAATTGGCAAAAGGGATTGACCGCATTGCAGCGATCCATCTGAAAGATACCT
TTGCCGTCACCGCTGACTCCCCCGGCCAATTTCGTGATGTGCCGTTTGGTGAAGGCTGTGTCGATTTCGTTAATCTGTTT
AAAACCCTGCGCCGCCTGAACTATCGCGGAACCTTCCTGATAGAGATGTGGACAGAAAAAGCGGCTGAGCCTTTGCTGGA
AATTATCCATGCCCGCCACTGGATCGAAGACAAAATGCGGTTGGCTGGCTGGGATAACGAATCCAGCCAGTTAACCCGCT
AA

Upstream 100 bases:

>100_bases
CAACAAGACCAGTAAATGATTCGGATAAGTGAGCGCAGCTAACTGTTTATGTAGATAAACACCGCTGCAACGTCAAGTAC
GAAGGGGAAGAGGAAAAACA

Downstream 100 bases:

>100_bases
GGAGCCACACATGAGCCACTATTTTCTCGGCATTGATCTGGGCGGTACCGTGACCAAAGCCGGTATTTATACCGCCGACG
GCAGCGAAATTGCCGTTACT

Product: putative L-xylulose 5-phosphate 3-epimerase

Products: NA

Alternate protein names: L-xylulose-5-phosphate 3-epimerase [H]

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MRIHPLGIYEKALPAGTSWVEKLAVAKSCGFDFVEMSVDESDERLARLDWSREERMAVISAIQQTGVRIPTLCLSAHRRY
PFGSRDAATREQAHTVMLQAIRLAQDLGIRTIQLAGYDVYYEPQDSETIARFEAGIAWAVKQAAAAQVMCAVEIMDTQFM
NSISKWKALDNKIGSPWFTVYPDIGNLTAWGNEVNSELAKGIDRIAAIHLKDTFAVTADSPGQFRDVPFGEGCVDFVNLF
KTLRRLNYRGTFLIEMWTEKAAEPLLEIIHARHWIEDKMRLAGWDNESSQLTR

Sequences:

>Translated_293_residues
MRIHPLGIYEKALPAGTSWVEKLAVAKSCGFDFVEMSVDESDERLARLDWSREERMAVISAIQQTGVRIPTLCLSAHRRY
PFGSRDAATREQAHTVMLQAIRLAQDLGIRTIQLAGYDVYYEPQDSETIARFEAGIAWAVKQAAAAQVMCAVEIMDTQFM
NSISKWKALDNKIGSPWFTVYPDIGNLTAWGNEVNSELAKGIDRIAAIHLKDTFAVTADSPGQFRDVPFGEGCVDFVNLF
KTLRRLNYRGTFLIEMWTEKAAEPLLEIIHARHWIEDKMRLAGWDNESSQLTR
>Mature_293_residues
MRIHPLGIYEKALPAGTSWVEKLAVAKSCGFDFVEMSVDESDERLARLDWSREERMAVISAIQQTGVRIPTLCLSAHRRY
PFGSRDAATREQAHTVMLQAIRLAQDLGIRTIQLAGYDVYYEPQDSETIARFEAGIAWAVKQAAAAQVMCAVEIMDTQFM
NSISKWKALDNKIGSPWFTVYPDIGNLTAWGNEVNSELAKGIDRIAAIHLKDTFAVTADSPGQFRDVPFGEGCVDFVNLF
KTLRRLNYRGTFLIEMWTEKAAEPLLEIIHARHWIEDKMRLAGWDNESSQLTR

Specific function: Catalyzes the isomerization of L-xylulose-5-phosphate to L-ribulose-5-phosphate (Potential). May be involved in the utilization of 2,3-diketo-L-gulonate [H]

COG id: COG3623

COG function: function code G; Putative L-xylulose-5-phosphate 3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HUMPI family [H]

Homologues:

Organism=Escherichia coli, GI87082294, Length=284, Percent_Identity=71.830985915493, Blast_Score=431, Evalue=1e-122,
Organism=Escherichia coli, GI1790641, Length=279, Percent_Identity=55.5555555555556, Blast_Score=330, Evalue=7e-92,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004560
- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: =5.1.3.22 [H]

Molecular weight: Translated: 33103; Mature: 33103

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIHPLGIYEKALPAGTSWVEKLAVAKSCGFDFVEMSVDESDERLARLDWSREERMAVIS
CCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHH
AIQQTGVRIPTLCLSAHRRYPFGSRDAATREQAHTVMLQAIRLAQDLGIRTIQLAGYDVY
HHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEEE
YEPQDSETIARFEAGIAWAVKQAAAAQVMCAVEIMDTQFMNSISKWKALDNKIGSPWFTV
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
YPDIGNLTAWGNEVNSELAKGIDRIAAIHLKDTFAVTADSPGQFRDVPFGEGCVDFVNLF
CCCCCCCCCCCHHHHHHHHHHHHHHHEEEEECEEEEECCCCCCCCCCCCCCHHHHHHHHH
KTLRRLNYRGTFLIEMWTEKAAEPLLEIIHARHWIEDKMRLAGWDNESSQLTR
HHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MRIHPLGIYEKALPAGTSWVEKLAVAKSCGFDFVEMSVDESDERLARLDWSREERMAVIS
CCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHH
AIQQTGVRIPTLCLSAHRRYPFGSRDAATREQAHTVMLQAIRLAQDLGIRTIQLAGYDVY
HHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEEE
YEPQDSETIARFEAGIAWAVKQAAAAQVMCAVEIMDTQFMNSISKWKALDNKIGSPWFTV
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
YPDIGNLTAWGNEVNSELAKGIDRIAAIHLKDTFAVTADSPGQFRDVPFGEGCVDFVNLF
CCCCCCCCCCCHHHHHHHHHHHHHHHEEEEECEEEEECCCCCCCCCCCCCCHHHHHHHHH
KTLRRLNYRGTFLIEMWTEKAAEPLLEIIHARHWIEDKMRLAGWDNESSQLTR
HHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]