Click here to switch to the map view.

The map label for this gene is yafK [H]

Identifier: 170025523

GI number: 170025523

Start: 3619720

End: 3620460

Strand: Direct

Name: yafK [H]

Synonym: YPK_3306

Alternate gene names: 170025523

Gene position: 3619720-3620460 (Clockwise)

Preceding gene: 170025514

Following gene: 170025526

Centisome position: 77.19

GC content: 45.34

Gene sequence:

>741_bases
ATGGGCAAAATCGCGCTGTTATTTGCGATGATAATTTGCTTGCCTGCGGCATCCTTCACCAGCTCAGCCAGTGAGCCAGT
GGCAGTATCCAAAGAGCTAAAACAGCAACTACTGGGGTCATCGGTTTATATTCAGATTTTCAAAGAAGAGCGTGTCTTGG
AGTTGTATGCCAAGCTACAAGGCGAGTATCGTTTAGTGCAAAGCTATCCTATTTGTGAATTCTCAGGAGGGCTTGGGCCG
AAACGCCGTGAAGGGGATTTCAAAAGCCCAGAAGGCTTTTACAGCATTAATACGCGCCATTTAAAACCCGACAGTCAGTT
TTATCGAGCCATTAATATCGGTTTTCCTAATGATTATGATAAGTCGCAAGGGTATTCAGGGAAATATCTGATGATCCACG
GTGCTTGTAAATCAATTGGCTGCTATGCAATGACCGATGCCTATATGGATGAGATATTTAACTACGTGAGAACCGCGTTT
ATCTTTGGTCAGGAAAAAGTGGATATCAGTATCTACCCCTTCCGTATGACAAAACAAAATATGCAACGCCACCGTAATTC
GTCCTATTCCAACTTCTGGCGTCAACTGCAACCGGGATATACCTATTTTGCCAAAAACCGGATGCCACCGCCCGTTTCAG
TCAGCAACGGGCAGTATGTGTTAAGCCCGCCACCGCTCACTAGTACGCCAACATCGCAATTGGCACTAATTAAAACCGAC
CCGCTCACCAAGACAGAATAA

Upstream 100 bases:

>100_bases
GCTAAAAAATTTCTGACTGATAATCTGCGCCTATAAGAAACCTACGGCTATAACGTAGAATTAGCGGCATTTTTAATATC
AATATTAAGTGGGAATCATT

Downstream 100 bases:

>100_bases
AGCAAATTCACCTGGTGCAATTTTGTGCCAGGTTTCATTACCGGTCAGTGGCTGGGTAGCAATTACCGTGACCACATCTT
TAGGTGTGGTCTGCTGCTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MGKIALLFAMIICLPAASFTSSASEPVAVSKELKQQLLGSSVYIQIFKEERVLELYAKLQGEYRLVQSYPICEFSGGLGP
KRREGDFKSPEGFYSINTRHLKPDSQFYRAINIGFPNDYDKSQGYSGKYLMIHGACKSIGCYAMTDAYMDEIFNYVRTAF
IFGQEKVDISIYPFRMTKQNMQRHRNSSYSNFWRQLQPGYTYFAKNRMPPPVSVSNGQYVLSPPPLTSTPTSQLALIKTD
PLTKTE

Sequences:

>Translated_246_residues
MGKIALLFAMIICLPAASFTSSASEPVAVSKELKQQLLGSSVYIQIFKEERVLELYAKLQGEYRLVQSYPICEFSGGLGP
KRREGDFKSPEGFYSINTRHLKPDSQFYRAINIGFPNDYDKSQGYSGKYLMIHGACKSIGCYAMTDAYMDEIFNYVRTAF
IFGQEKVDISIYPFRMTKQNMQRHRNSSYSNFWRQLQPGYTYFAKNRMPPPVSVSNGQYVLSPPPLTSTPTSQLALIKTD
PLTKTE
>Mature_245_residues
GKIALLFAMIICLPAASFTSSASEPVAVSKELKQQLLGSSVYIQIFKEERVLELYAKLQGEYRLVQSYPICEFSGGLGPK
RREGDFKSPEGFYSINTRHLKPDSQFYRAINIGFPNDYDKSQGYSGKYLMIHGACKSIGCYAMTDAYMDEIFNYVRTAFI
FGQEKVDISIYPFRMTKQNMQRHRNSSYSNFWRQLQPGYTYFAKNRMPPPVSVSNGQYVLSPPPLTSTPTSQLALIKTDP
LTKTE

Specific function: Unknown

COG id: COG3034

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1786418, Length=246, Percent_Identity=58.9430894308943, Blast_Score=302, Evalue=1e-83,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 27942; Mature: 27811

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKIALLFAMIICLPAASFTSSASEPVAVSKELKQQLLGSSVYIQIFKEERVLELYAKLQ
CCHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHC
GEYRLVQSYPICEFSGGLGPKRREGDFKSPEGFYSINTRHLKPDSQFYRAINIGFPNDYD
CCEEEEECCCCEEECCCCCCCCCCCCCCCCCCEEEECCEEECCCHHEEEEEECCCCCCCC
KSQGYSGKYLMIHGACKSIGCYAMTDAYMDEIFNYVRTAFIFGQEKVDISIYPFRMTKQN
CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEHHHHH
MQRHRNSSYSNFWRQLQPGYTYFAKNRMPPPVSVSNGQYVLSPPPLTSTPTSQLALIKTD
HHHHCCCCHHHHHHHCCCCCEEEECCCCCCCEEECCCEEEECCCCCCCCCCCCEEEEECC
PLTKTE
CCCCCC
>Mature Secondary Structure 
GKIALLFAMIICLPAASFTSSASEPVAVSKELKQQLLGSSVYIQIFKEERVLELYAKLQ
CHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHC
GEYRLVQSYPICEFSGGLGPKRREGDFKSPEGFYSINTRHLKPDSQFYRAINIGFPNDYD
CCEEEEECCCCEEECCCCCCCCCCCCCCCCCCEEEECCEEECCCHHEEEEEECCCCCCCC
KSQGYSGKYLMIHGACKSIGCYAMTDAYMDEIFNYVRTAFIFGQEKVDISIYPFRMTKQN
CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEHHHHH
MQRHRNSSYSNFWRQLQPGYTYFAKNRMPPPVSVSNGQYVLSPPPLTSTPTSQLALIKTD
HHHHCCCCHHHHHHHCCCCCEEEECCCCCCCEEECCCEEEECCCCCCCCCCCCEEEEECC
PLTKTE
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]