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The map label for this gene is ydcJ [H]

Identifier: 170024888

GI number: 170024888

Start: 2929148

End: 2930557

Strand: Direct

Name: ydcJ [H]

Synonym: YPK_2663

Alternate gene names: 170024888

Gene position: 2929148-2930557 (Clockwise)

Preceding gene: 170024875

Following gene: 170024900

Centisome position: 62.46

GC content: 49.22

Gene sequence:

>1410_bases
ATGAACCCCCAACAGTTTGTGCATCCCGATGAGATACGGGCCAAATTCTCCAGCGCTATGTCGGATATGTATCAGGCCGA
AGTCCCCCTATATAGCACATTATTACGGCTCGTTGCGGACACGAATACACAAGAGATGGTGCAAGATCAGAAGCTTACCC
GTCATTTGCAGCAAACTGGGGAAACTGAACGCCTAACGATGGAAAGACATGGCGCCATCCGCGTCGGGACAGCCGAAGAA
CTCAAGATGCTGCGGCGCTTGTTTGCAGTCATGGGAATGGTGCCGGTCGGTTATTATGATTTAGCACCAGCGGGTGTCCC
GGTTCACTCCACCGCCTTCCGTGCGGTGCATGAAACCTCACTGCAAGCCTGCCCTTTCAGAGTCTTCACCTCATTACTGC
GTCTGGAGTTGATTGAGCAACCTACACTACGGCAACTGGCTGCGGATATTCTGGCGAAAAGAACAATTTTCACCCCACAG
GCGATTAAACTAATTGTTCAGCATGAAACATCGGGGGGGCTCAATCGCCATCAAGCCGATGATTTCATTGCTCAGTCGCT
GGAAACATTTCGCTGGCATCATCAGGCAACGGTCAGCACTGAAACCTACCAACAGCTACACGATCAACACCGTCTGATTG
CTGATGTGGTCGCTTTCAAAGGTCCGCATATTAACCACCTAACTCCACGGACCTTAAATATCGATGTCGTACAAACAGCA
ATGGCAGAGCATAATATGATGCCCAAAGCCGTTATCGAAGGGCCACCCCCCCGCCACTGCCCAATACTGTTACGCCAAAC
CAGCTTCAAGGCGCTGGAGGAAAAAATCGCGTTTGTATCAAATGGTGGGCAAATAATACCAGGCCACCATACGGCCCGCT
TCGGGGAGATAGAGCAACGAGGAGCCGCTTTGACGGCCAAAGGCCGTAATCTGTATGACCACTTACTGCAAAGCGCACAG
GATCAATTGAACGTTCCTGTAAATGAGAACAATGCGGCGCAATATAGCGCGATCCTGAGAGAGAAATTTAGTCAATTCCC
TGATGATTACCCAACAATGCGAGCAGAGAAACTCGCCTTCTTCCGCTATTTTCCTACAGAAAAAGGCCTTATCACTGCAT
CAATACAGGAAATACAGGAAATGACATTAGACGAACTTATTGATAACGGCTTTATTCAATATGAACCGTTGGTTTATGAA
GATTTCCTGCCAGTCAGCGCCGCTGGAATATTCCAGTCAAACTTAGGCGAGAAAGGGCAGAGTCACTTTACCGGGCACTC
CAATAAAGCAGACTTCCAGCGGGATTTGGGGATTGCGGTTATTGATGAACTGCAACTCTACGAAGCAACCCAGCAACGTT
CCGTTGCTGAATGTGCAGCCGCCCTCAAACTAACGTTGTTAAGCCAATAA

Upstream 100 bases:

>100_bases
AAACTGTATCAGCGTGATCCGCAACCATGATGGCCTACATTGAAAATTGTCTACATGAAAACCTGTCTACACTGAAAGCG
CCTGAAGGAGTTATCCGATT

Downstream 100 bases:

>100_bases
AAGGGAGCTACTTAGTATCAGGAGATAGCGCCTGAATATTTAACAATAGTTTATCTGCCCTATCGGACGGTAGTTGCGCA
TCGACAGGTAAGTACCACCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 469; Mature: 469

Protein sequence:

>469_residues
MNPQQFVHPDEIRAKFSSAMSDMYQAEVPLYSTLLRLVADTNTQEMVQDQKLTRHLQQTGETERLTMERHGAIRVGTAEE
LKMLRRLFAVMGMVPVGYYDLAPAGVPVHSTAFRAVHETSLQACPFRVFTSLLRLELIEQPTLRQLAADILAKRTIFTPQ
AIKLIVQHETSGGLNRHQADDFIAQSLETFRWHHQATVSTETYQQLHDQHRLIADVVAFKGPHINHLTPRTLNIDVVQTA
MAEHNMMPKAVIEGPPPRHCPILLRQTSFKALEEKIAFVSNGGQIIPGHHTARFGEIEQRGAALTAKGRNLYDHLLQSAQ
DQLNVPVNENNAAQYSAILREKFSQFPDDYPTMRAEKLAFFRYFPTEKGLITASIQEIQEMTLDELIDNGFIQYEPLVYE
DFLPVSAAGIFQSNLGEKGQSHFTGHSNKADFQRDLGIAVIDELQLYEATQQRSVAECAAALKLTLLSQ

Sequences:

>Translated_469_residues
MNPQQFVHPDEIRAKFSSAMSDMYQAEVPLYSTLLRLVADTNTQEMVQDQKLTRHLQQTGETERLTMERHGAIRVGTAEE
LKMLRRLFAVMGMVPVGYYDLAPAGVPVHSTAFRAVHETSLQACPFRVFTSLLRLELIEQPTLRQLAADILAKRTIFTPQ
AIKLIVQHETSGGLNRHQADDFIAQSLETFRWHHQATVSTETYQQLHDQHRLIADVVAFKGPHINHLTPRTLNIDVVQTA
MAEHNMMPKAVIEGPPPRHCPILLRQTSFKALEEKIAFVSNGGQIIPGHHTARFGEIEQRGAALTAKGRNLYDHLLQSAQ
DQLNVPVNENNAAQYSAILREKFSQFPDDYPTMRAEKLAFFRYFPTEKGLITASIQEIQEMTLDELIDNGFIQYEPLVYE
DFLPVSAAGIFQSNLGEKGQSHFTGHSNKADFQRDLGIAVIDELQLYEATQQRSVAECAAALKLTLLSQ
>Mature_469_residues
MNPQQFVHPDEIRAKFSSAMSDMYQAEVPLYSTLLRLVADTNTQEMVQDQKLTRHLQQTGETERLTMERHGAIRVGTAEE
LKMLRRLFAVMGMVPVGYYDLAPAGVPVHSTAFRAVHETSLQACPFRVFTSLLRLELIEQPTLRQLAADILAKRTIFTPQ
AIKLIVQHETSGGLNRHQADDFIAQSLETFRWHHQATVSTETYQQLHDQHRLIADVVAFKGPHINHLTPRTLNIDVVQTA
MAEHNMMPKAVIEGPPPRHCPILLRQTSFKALEEKIAFVSNGGQIIPGHHTARFGEIEQRGAALTAKGRNLYDHLLQSAQ
DQLNVPVNENNAAQYSAILREKFSQFPDDYPTMRAEKLAFFRYFPTEKGLITASIQEIQEMTLDELIDNGFIQYEPLVYE
DFLPVSAAGIFQSNLGEKGQSHFTGHSNKADFQRDLGIAVIDELQLYEATQQRSVAECAAALKLTLLSQ

Specific function: Unknown

COG id: COG5383

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv3292 [H]

Homologues:

Organism=Escherichia coli, GI1787692, Length=454, Percent_Identity=54.8458149779736, Blast_Score=465, Evalue=1e-132,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009770 [H]

Pfam domain/function: PF07063 DUF1338 [H]

EC number: NA

Molecular weight: Translated: 52863; Mature: 52863

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPQQFVHPDEIRAKFSSAMSDMYQAEVPLYSTLLRLVADTNTQEMVQDQKLTRHLQQTG
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
ETERLTMERHGAIRVGTAEELKMLRRLFAVMGMVPVGYYDLAPAGVPVHSTAFRAVHETS
CHHEEEHHHCCCEEECCHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHH
LQACPFRVFTSLLRLELIEQPTLRQLAADILAKRTIFTPQAIKLIVQHETSGGLNRHQAD
HHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHEECCCCCCCHHHHH
DFIAQSLETFRWHHQATVSTETYQQLHDQHRLIADVVAFKGPHINHLTPRTLNIDVVQTA
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHH
MAEHNMMPKAVIEGPPPRHCPILLRQTSFKALEEKIAFVSNGGQIIPGHHTARFGEIEQR
HHHHCCCCHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCEECCCCCCHHHCCHHHC
GAALTAKGRNLYDHLLQSAQDQLNVPVNENNAAQYSAILREKFSQFPDDYPTMRAEKLAF
CCEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
FRYFPTEKGLITASIQEIQEMTLDELIDNGFIQYEPLVYEDFLPVSAAGIFQSNLGEKGQ
HHCCCCCCCEEHHHHHHHHHHHHHHHHHCCCEEECCCHHHCCCCHHHHHHHHHHCCCCCC
SHFTGHSNKADFQRDLGIAVIDELQLYEATQQRSVAECAAALKLTLLSQ
CCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNPQQFVHPDEIRAKFSSAMSDMYQAEVPLYSTLLRLVADTNTQEMVQDQKLTRHLQQTG
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
ETERLTMERHGAIRVGTAEELKMLRRLFAVMGMVPVGYYDLAPAGVPVHSTAFRAVHETS
CHHEEEHHHCCCEEECCHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHH
LQACPFRVFTSLLRLELIEQPTLRQLAADILAKRTIFTPQAIKLIVQHETSGGLNRHQAD
HHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHEECCCCCCCHHHHH
DFIAQSLETFRWHHQATVSTETYQQLHDQHRLIADVVAFKGPHINHLTPRTLNIDVVQTA
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHH
MAEHNMMPKAVIEGPPPRHCPILLRQTSFKALEEKIAFVSNGGQIIPGHHTARFGEIEQR
HHHHCCCCHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCEECCCCCCHHHCCHHHC
GAALTAKGRNLYDHLLQSAQDQLNVPVNENNAAQYSAILREKFSQFPDDYPTMRAEKLAF
CCEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
FRYFPTEKGLITASIQEIQEMTLDELIDNGFIQYEPLVYEDFLPVSAAGIFQSNLGEKGQ
HHCCCCCCCEEHHHHHHHHHHHHHHHHHCCCEEECCCHHHCCCCHHHHHHHHHHCCCCCC
SHFTGHSNKADFQRDLGIAVIDELQLYEATQQRSVAECAAALKLTLLSQ
CCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]