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The map label for this gene is flgD [H]

Identifier: 170024648

GI number: 170024648

Start: 2656294

End: 2656980

Strand: Reverse

Name: flgD [H]

Synonym: YPK_2423

Alternate gene names: 170024648

Gene position: 2656980-2656294 (Counterclockwise)

Preceding gene: 170024649

Following gene: 170024647

Centisome position: 56.66

GC content: 52.69

Gene sequence:

>687_bases
ATGGCCATTACCAATTCCCTGACGGAAAGTGATTACGGTATTACCGGCACGACCGGGACCAGTTCCACTACCGGCAGCAG
TAGTCAAGATCTGCAAAACAGCTTCCTGACGTTATTAGTGGCGCAGTTGAAAAACCAAGACCCTACTAACCCAATGGAAA
ACAACGAGTTGACCACACAGTTGGCGCAAATCAACACCGTGAGTGGCATTGAAAAGCTGAATACGACCCTCGGTGCTATT
ACCGGTCAAATTGACAGCAGCCAATCTCTGTACGCCACCAGCCTGATTGGTCGAGGCGTTATGGTCCCTGGTACCAATAT
ATTTACGGGCAGCACCGATGGCACGGTCAGCACCACGCCTTTTGGCCTCGAATTGCAACGACCTGCGGATAAAGTGACCG
CCACCATTAGCGATAGCAATGGTCAGGTGGTACGGACCATTGAGATCGGTGGTTTAAACGCAGGTGTTCACTCCTTTACC
TGGGATGGCTCACTGGACGCGGGCGGTAATGCGCCAGATGGTGCTTATACCGTAGCCATTACTGCCAGCAATGGTGGGGA
ATCACTGGTCGCAACGCCGTTGAACTACGCCATTGTCAACGGTGTAACCCGCGGCGCGGATGGCTCCAAACTGGACTTGG
GTCTGGCAGGAACCATCACGCTGGATGAAGTGCGCCAGATTTTATAA

Upstream 100 bases:

>100_bases
CTGCATCACGTAGCTACCAGGCAAACGTTGAAGTCCTGAATACCACCAAATCCCTGATGCTCAAAACGCTGACACTGGGT
CAATAACAGGAGCCAGCATA

Downstream 100 bases:

>100_bases
GTCTGTTGTTAGGCTTTCATAGAACTGTTAGGCCTTCATAGAACCGTTATGCCGCCGTAGATCAACTATGCGGTGATAAA
GCAGCAGACAGGACGGTAAT

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MAITNSLTESDYGITGTTGTSSTTGSSSQDLQNSFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAI
TGQIDSSQSLYATSLIGRGVMVPGTNIFTGSTDGTVSTTPFGLELQRPADKVTATISDSNGQVVRTIEIGGLNAGVHSFT
WDGSLDAGGNAPDGAYTVAITASNGGESLVATPLNYAIVNGVTRGADGSKLDLGLAGTITLDEVRQIL

Sequences:

>Translated_228_residues
MAITNSLTESDYGITGTTGTSSTTGSSSQDLQNSFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAI
TGQIDSSQSLYATSLIGRGVMVPGTNIFTGSTDGTVSTTPFGLELQRPADKVTATISDSNGQVVRTIEIGGLNAGVHSFT
WDGSLDAGGNAPDGAYTVAITASNGGESLVATPLNYAIVNGVTRGADGSKLDLGLAGTITLDEVRQIL
>Mature_227_residues
AITNSLTESDYGITGTTGTSSTTGSSSQDLQNSFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAIT
GQIDSSQSLYATSLIGRGVMVPGTNIFTGSTDGTVSTTPFGLELQRPADKVTATISDSNGQVVRTIEIGGLNAGVHSFTW
DGSLDAGGNAPDGAYTVAITASNGGESLVATPLNYAIVNGVTRGADGSKLDLGLAGTITLDEVRQIL

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=202, Percent_Identity=72.7722772277228, Blast_Score=287, Evalue=5e-79,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 23346; Mature: 23215

Theoretical pI: Translated: 3.96; Mature: 3.96

Prosite motif: PS00687 ALDEHYDE_DEHYDR_GLU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAITNSLTESDYGITGTTGTSSTTGSSSQDLQNSFLTLLVAQLKNQDPTNPMENNELTTQ
CCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
LAQINTVSGIEKLNTTLGAITGQIDSSQSLYATSLIGRGVMVPGTNIFTGSTDGTVSTTP
HHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEHHHHCCCEECCCCEEEECCCCCEEECCC
FGLELQRPADKVTATISDSNGQVVRTIEIGGLNAGVHSFTWDGSLDAGGNAPDGAYTVAI
CCEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCEEEEEE
TASNGGESLVATPLNYAIVNGVTRGADGSKLDLGLAGTITLDEVRQIL
EECCCCCEEEECCCCEEEECCEECCCCCCEEEEEEEEEEEHHHHHHHC
>Mature Secondary Structure 
AITNSLTESDYGITGTTGTSSTTGSSSQDLQNSFLTLLVAQLKNQDPTNPMENNELTTQ
CCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
LAQINTVSGIEKLNTTLGAITGQIDSSQSLYATSLIGRGVMVPGTNIFTGSTDGTVSTTP
HHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEHHHHCCCEECCCCEEEECCCCCEEECCC
FGLELQRPADKVTATISDSNGQVVRTIEIGGLNAGVHSFTWDGSLDAGGNAPDGAYTVAI
CCEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCEEEEEE
TASNGGESLVATPLNYAIVNGVTRGADGSKLDLGLAGTITLDEVRQIL
EECCCCCEEEECCCCEEEECCEECCCCCCEEEEEEEEEEEHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]