Click here to switch to the map view.

The map label for this gene is xerD [H]

Identifier: 170024532

GI number: 170024532

Start: 2553107

End: 2554114

Strand: Reverse

Name: xerD [H]

Synonym: YPK_2307

Alternate gene names: 170024532

Gene position: 2554114-2553107 (Counterclockwise)

Preceding gene: 170024533

Following gene: 170024520

Centisome position: 54.47

GC content: 46.23

Gene sequence:

>1008_bases
ATGGCTGTTCGTAAATTAACTACTGGCAAATGGATTTGTGAGTGTTATCCCAATGGACGGCGTGGTGAACGGCTTCGTAA
GCAGTTTGCTACTAAAGGCGAGGCGCTCTCATTTGAGCGCCGTATGATGCAGAAAGATCAGGTTGTTGAGGTTTCTGTGA
GCAATACATTGAAACTCAGCAATTTAGTTAGTCGTTGGTATGAAATGCACGGGCAGACTTTAACATCAGGTAAAACCCGA
AAGGTAAAGTTAGAGGCTATCTGCGAACGGTTGGGTGACCCACTGGTCACTGATTTTGACAAGAATGCTTTTGCTGTTTA
TCGGGAACAGCGGCTTAACGGCAAATGGCAAACTAAGGGCAGGGCGGCACCGAAACAAGCAACGGTTAACCGTGAATATT
CTTATCTTCGGGCAGTATTCTCAGAGTTAAAACGGCTTGGGGAATGGATGGGTGATAATCCTCTGGATGGCTTACGCCAA
TTTAAAGAGGGGGATCAGGAACTGGCATTTCTTTATCCTGAAGATATAAAACGCCTACTGGTAGCTTGTGATGAGTCAGA
GAATAAAGACTTAGGTAACGTTGTTCGTATATGCCTGGCAACAGGCGCGAGGTGGAGTGAGGCGCAAGGGCTTTCTCAGT
CTCAACTTATGCCGAGCCGTGTCACGTTTACCCAGACTAAAAGTAAACGCAATCGTACAGTTCCCATCTCCAAGCGTTTA
TATGACCGCTTGCCTAAACGCCGCGGGTCAATGTTCTCATCCTGTTATGATGCATTCAAACACGCATTGAAGAGATCCGC
TATTGAGTTGCCTAAAGGGCAGCGCACACACGTACTCAGGCATACCTTTGCCAGTCACTTTATGATGGGCGGCGGAAACA
TTTTAGTGCTGCAACAAATTCTCGGCCATAGCACTATTTTAATGACGATGAGATATGCACATTTCGCTCCAGATCATCTG
GATGCAGCACTAACCCTAAACCCCTATGACAAGCTTGAGAATGACTAA

Upstream 100 bases:

>100_bases
AAAAAAGGTCAATACATTGCTGATGCAGTGACTTATACCGTAATGGGTACAAATGGTTTGGGCCTTTGGTTTATTGTGAC
CCCTAATAAGTAGGTGAATG

Downstream 100 bases:

>100_bases
TTTTTAGTGGCGGCACAAGCTAACCCTGCGCAAATATAAACAAATATACTCACAATTAACCAATTGATATAACTTAACTT
TATGTTTTCATTGGTTATAT

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MAVRKLTTGKWICECYPNGRRGERLRKQFATKGEALSFERRMMQKDQVVEVSVSNTLKLSNLVSRWYEMHGQTLTSGKTR
KVKLEAICERLGDPLVTDFDKNAFAVYREQRLNGKWQTKGRAAPKQATVNREYSYLRAVFSELKRLGEWMGDNPLDGLRQ
FKEGDQELAFLYPEDIKRLLVACDESENKDLGNVVRICLATGARWSEAQGLSQSQLMPSRVTFTQTKSKRNRTVPISKRL
YDRLPKRRGSMFSSCYDAFKHALKRSAIELPKGQRTHVLRHTFASHFMMGGGNILVLQQILGHSTILMTMRYAHFAPDHL
DAALTLNPYDKLEND

Sequences:

>Translated_335_residues
MAVRKLTTGKWICECYPNGRRGERLRKQFATKGEALSFERRMMQKDQVVEVSVSNTLKLSNLVSRWYEMHGQTLTSGKTR
KVKLEAICERLGDPLVTDFDKNAFAVYREQRLNGKWQTKGRAAPKQATVNREYSYLRAVFSELKRLGEWMGDNPLDGLRQ
FKEGDQELAFLYPEDIKRLLVACDESENKDLGNVVRICLATGARWSEAQGLSQSQLMPSRVTFTQTKSKRNRTVPISKRL
YDRLPKRRGSMFSSCYDAFKHALKRSAIELPKGQRTHVLRHTFASHFMMGGGNILVLQQILGHSTILMTMRYAHFAPDHL
DAALTLNPYDKLEND
>Mature_334_residues
AVRKLTTGKWICECYPNGRRGERLRKQFATKGEALSFERRMMQKDQVVEVSVSNTLKLSNLVSRWYEMHGQTLTSGKTRK
VKLEAICERLGDPLVTDFDKNAFAVYREQRLNGKWQTKGRAAPKQATVNREYSYLRAVFSELKRLGEWMGDNPLDGLRQF
KEGDQELAFLYPEDIKRLLVACDESENKDLGNVVRICLATGARWSEAQGLSQSQLMPSRVTFTQTKSKRNRTVPISKRLY
DRLPKRRGSMFSSCYDAFKHALKRSAIELPKGQRTHVLRHTFASHFMMGGGNILVLQQILGHSTILMTMRYAHFAPDHLD
AALTLNPYDKLEND

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=222, Percent_Identity=28.3783783783784, Blast_Score=71, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 38456; Mature: 38325

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVRKLTTGKWICECYPNGRRGERLRKQFATKGEALSFERRMMQKDQVVEVSVSNTLKLS
CCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCHHHHH
NLVSRWYEMHGQTLTSGKTRKVKLEAICERLGDPLVTDFDKNAFAVYREQRLNGKWQTKG
HHHHHHHHHCCCEECCCCCCEEEHHHHHHHHCCCCEECCCCCHHHHHHHHHCCCCCCCCC
RAAPKQATVNREYSYLRAVFSELKRLGEWMGDNPLDGLRQFKEGDQELAFLYPEDIKRLL
CCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEECHHHHHHHH
VACDESENKDLGNVVRICLATGARWSEAQGLSQSQLMPSRVTFTQTKSKRNRTVPISKRL
HHCCCCCCCCHHHHHHHHHHCCCCCHHHCCCCHHHCCCCCEEEHHHHCCCCCCCCHHHHH
YDRLPKRRGSMFSSCYDAFKHALKRSAIELPKGQRTHVLRHTFASHFMMGGGNILVLQQI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
LGHSTILMTMRYAHFAPDHLDAALTLNPYDKLEND
HCCHHHHHHHHHHHCCCCCCCEEEEECCHHHCCCC
>Mature Secondary Structure 
AVRKLTTGKWICECYPNGRRGERLRKQFATKGEALSFERRMMQKDQVVEVSVSNTLKLS
CCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCHHHHH
NLVSRWYEMHGQTLTSGKTRKVKLEAICERLGDPLVTDFDKNAFAVYREQRLNGKWQTKG
HHHHHHHHHCCCEECCCCCCEEEHHHHHHHHCCCCEECCCCCHHHHHHHHHCCCCCCCCC
RAAPKQATVNREYSYLRAVFSELKRLGEWMGDNPLDGLRQFKEGDQELAFLYPEDIKRLL
CCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEECHHHHHHHH
VACDESENKDLGNVVRICLATGARWSEAQGLSQSQLMPSRVTFTQTKSKRNRTVPISKRL
HHCCCCCCCCHHHHHHHHHHCCCCCHHHCCCCHHHCCCCCEEEHHHHCCCCCCCCHHHHH
YDRLPKRRGSMFSSCYDAFKHALKRSAIELPKGQRTHVLRHTFASHFMMGGGNILVLQQI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
LGHSTILMTMRYAHFAPDHLDAALTLNPYDKLEND
HCCHHHHHHHHHHHCCCCCCCEEEEECCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA