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The map label for this gene is fimB [H]

Identifier: 170024498

GI number: 170024498

Start: 2525211

End: 2525942

Strand: Direct

Name: fimB [H]

Synonym: YPK_2273

Alternate gene names: 170024498

Gene position: 2525211-2525942 (Clockwise)

Preceding gene: 170024497

Following gene: 170024499

Centisome position: 53.85

GC content: 42.35

Gene sequence:

>732_bases
ATGATCTTGATTGCCCGCCAAATTATCGCCTGCTCGATGTTGCTGCTCACCAGCGTATCCTTATCGGTACAAGCCAGTGT
TGTCATGACAGGGACGCGTATCATTTATCCTGAAGGCTCGCGGGAAAAAGTATTACAGCTGAGTAATAAAGATGACCATC
CTAATTTAGTCCAACTGTGGATGGATGATGGAAATAATCAATCTTCACCCTCGAAAAGTGATGTTCCTTTCGCACTGACA
CCACAAATATTCCGGATGGAAGCCAACAGTGGGCAAGTTGTCCGTTTGACTTACATTGCGCGTAATTTACCCAAAAATCG
TGAATCGGTTTTTTATCTTAACTTTTTACAAATCCCCGCATTAAAAGCCGATACGCAGCCGGATAATAAGTTGGTTTTGA
TCGTCAATAACCGACTAAAAGTCTTTTTCCGCCCTGCAGCGTTAAAGGAAAATATCGATACGCTAGGTGAAAAAATAAGC
GTCACCCTAGATACAACGACAGGTAACAAAATTAAAGTACATAACCCAACAGGTTATTACATCAGCCTGCGCGATGCTAA
AATTGTCAGTAACGGCAAAACCGTTTCGTTTGCCACTAGTGAAATGTTCGCGCCCGACTCTACCACTGATTTGGCCCTGC
CCATTGGGATTAAAGCCAAGAAAGGGGAATTACTGATACTGAACGTAGTTAATGATTACGGTGCCACCATTCCTAATAAT
TATTATCTGTAA

Upstream 100 bases:

>100_bases
ACCCCTAACCGTTCATGGCAACTGAGCATTTTCATGAATATGTCGGCCAACCGGTAACGGGGCCTTAATGGACCAGAGAA
AACAAGGATAAGTAAGTAAC

Downstream 100 bases:

>100_bases
TCTGCTCCTGATGTTAATCCAATCTATCACCAGACACTGGGAACACTGGTGAGAATCGCTCCTTGGCTCTCATGCTTGCT
GACACAAAGCTTGCTGGTCA

Product: pili assembly chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MILIARQIIACSMLLLTSVSLSVQASVVMTGTRIIYPEGSREKVLQLSNKDDHPNLVQLWMDDGNNQSSPSKSDVPFALT
PQIFRMEANSGQVVRLTYIARNLPKNRESVFYLNFLQIPALKADTQPDNKLVLIVNNRLKVFFRPAALKENIDTLGEKIS
VTLDTTTGNKIKVHNPTGYYISLRDAKIVSNGKTVSFATSEMFAPDSTTDLALPIGIKAKKGELLILNVVNDYGATIPNN
YYL

Sequences:

>Translated_243_residues
MILIARQIIACSMLLLTSVSLSVQASVVMTGTRIIYPEGSREKVLQLSNKDDHPNLVQLWMDDGNNQSSPSKSDVPFALT
PQIFRMEANSGQVVRLTYIARNLPKNRESVFYLNFLQIPALKADTQPDNKLVLIVNNRLKVFFRPAALKENIDTLGEKIS
VTLDTTTGNKIKVHNPTGYYISLRDAKIVSNGKTVSFATSEMFAPDSTTDLALPIGIKAKKGELLILNVVNDYGATIPNN
YYL
>Mature_243_residues
MILIARQIIACSMLLLTSVSLSVQASVVMTGTRIIYPEGSREKVLQLSNKDDHPNLVQLWMDDGNNQSSPSKSDVPFALT
PQIFRMEANSGQVVRLTYIARNLPKNRESVFYLNFLQIPALKADTQPDNKLVLIVNNRLKVFFRPAALKENIDTLGEKIS
VTLDTTTGNKIKVHNPTGYYISLRDAKIVSNGKTVSFATSEMFAPDSTTDLALPIGIKAKKGELLILNVVNDYGATIPNN
YYL

Specific function: Required for the biogenesis of the filamentous hemagglutinin and the fimbria [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1788428, Length=224, Percent_Identity=33.9285714285714, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1786333, Length=249, Percent_Identity=31.7269076305221, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1789532, Length=239, Percent_Identity=31.7991631799163, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI1790771, Length=228, Percent_Identity=27.6315789473684, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1786743, Length=229, Percent_Identity=30.5676855895196, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1787171, Length=228, Percent_Identity=28.5087719298246, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1786936, Length=231, Percent_Identity=30.7359307359307, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1788677, Length=212, Percent_Identity=31.1320754716981, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI87082203, Length=196, Percent_Identity=27.0408163265306, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 26917; Mature: 26917

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILIARQIIACSMLLLTSVSLSVQASVVMTGTRIIYPEGSREKVLQLSNKDDHPNLVQLW
CEEEEHHHHHHHHHHHHHCCEEEEEEEEEECEEEEECCCCHHHEEEECCCCCCCCEEEEE
MDDGNNQSSPSKSDVPFALTPQIFRMEANSGQVVRLTYIARNLPKNRESVFYLNFLQIPA
EECCCCCCCCCCCCCCEEECCEEEEEECCCCCEEEEEEEECCCCCCCCEEEEEEEEECCC
LKADTQPDNKLVLIVNNRLKVFFRPAALKENIDTLGEKISVTLDTTTGNKIKVHNPTGYY
EECCCCCCCEEEEEECCCEEEEEECCHHHHHHHHCCCEEEEEEECCCCCEEEEECCCCEE
ISLRDAKIVSNGKTVSFATSEMFAPDSTTDLALPIGIKAKKGELLILNVVNDYGATIPNN
EEEECEEEECCCCEEEEEECCEECCCCCCCEEEEECEEECCCCEEEEEEECCCCCCCCCC
YYL
CCC
>Mature Secondary Structure
MILIARQIIACSMLLLTSVSLSVQASVVMTGTRIIYPEGSREKVLQLSNKDDHPNLVQLW
CEEEEHHHHHHHHHHHHHCCEEEEEEEEEECEEEEECCCCHHHEEEECCCCCCCCEEEEE
MDDGNNQSSPSKSDVPFALTPQIFRMEANSGQVVRLTYIARNLPKNRESVFYLNFLQIPA
EECCCCCCCCCCCCCCEEECCEEEEEECCCCCEEEEEEEECCCCCCCCEEEEEEEEECCC
LKADTQPDNKLVLIVNNRLKVFFRPAALKENIDTLGEKISVTLDTTTGNKIKVHNPTGYY
EECCCCCCCEEEEEECCCEEEEEECCHHHHHHHHCCCEEEEEEECCCCCEEEEECCCCEE
ISLRDAKIVSNGKTVSFATSEMFAPDSTTDLALPIGIKAKKGELLILNVVNDYGATIPNN
EEEECEEEECCCCEEEEEECCEECCCCCCCEEEEECEEECCCCEEEEEEECCCCCCCCCC
YYL
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1360139; 1354611; 12910271 [H]