Click here to switch to the map view.

The map label for this gene is yoaB [H]

Identifier: 170024363

GI number: 170024363

Start: 2361157

End: 2361501

Strand: Direct

Name: yoaB [H]

Synonym: YPK_2129

Alternate gene names: 170024363

Gene position: 2361157-2361501 (Clockwise)

Preceding gene: 170024357

Following gene: 170024369

Centisome position: 50.35

GC content: 48.99

Gene sequence:

>345_bases
ATGAGTATTGAGAGAATTAATCCGGAGAAACGTTGGTCAGATGCTGTGATACACAACGACACTATCTATTACACCAGCGT
ACCTGAAAATCTGGATGCCGATATCACCGCCCAGACCGCCAATACCCTGGCGGCCATTGATATGATGCTGCACCAATTAG
GCTCGGATAAAAGCCGGGTTCTGGATGCCACCATTTTCTTGGCCGATAAAGCTGACTTTGCGGGTATGAATGCCGCTTGG
GATGCCTGGGTTGTTGACGGCAACGCGCCCGTTCGCTGTACGGTCGAAGCCAAACTGATGAACCCGGACTATAAAGTCGA
AATCAAAATCATTGCTGCAATATGA

Upstream 100 bases:

>100_bases
GATTATGCCAAGCCAATGGCTCTACGACCACACATTCTCTTTCCTTGCTATGATACCCTTCGTACATAACTGACATTGAC
CCTCACAAAATGGAGTAAAA

Downstream 100 bases:

>100_bases
TTCGTTCATAAATGTAGCTAGTGATAGATGTAGTTGAGTGATAGATGTAGTTGAGTGATAGATGTAGTTGAGTGATAGAT
GTAGTTGAGTGATAGATGTA

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 113

Protein sequence:

>114_residues
MSIERINPEKRWSDAVIHNDTIYYTSVPENLDADITAQTANTLAAIDMMLHQLGSDKSRVLDATIFLADKADFAGMNAAW
DAWVVDGNAPVRCTVEAKLMNPDYKVEIKIIAAI

Sequences:

>Translated_114_residues
MSIERINPEKRWSDAVIHNDTIYYTSVPENLDADITAQTANTLAAIDMMLHQLGSDKSRVLDATIFLADKADFAGMNAAW
DAWVVDGNAPVRCTVEAKLMNPDYKVEIKIIAAI
>Mature_113_residues
SIERINPEKRWSDAVIHNDTIYYTSVPENLDADITAQTANTLAAIDMMLHQLGSDKSRVLDATIFLADKADFAGMNAAWD
AWVVDGNAPVRCTVEAKLMNPDYKVEIKIIAAI

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=114, Percent_Identity=72.8070175438597, Blast_Score=174, Evalue=2e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 12610; Mature: 12479

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIERINPEKRWSDAVIHNDTIYYTSVPENLDADITAQTANTLAAIDMMLHQLGSDKSRV
CCCCCCCCCCCCCCCEEECCEEEEEECCCCCCCCEEECCHHHHHHHHHHHHHHCCCCHHE
LDATIFLADKADFAGMNAAWDAWVVDGNAPVRCTVEAKLMNPDYKVEIKIIAAI
EEEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCEEEEEEEEEEC
>Mature Secondary Structure 
SIERINPEKRWSDAVIHNDTIYYTSVPENLDADITAQTANTLAAIDMMLHQLGSDKSRV
CCCCCCCCCCCCCCEEECCEEEEEECCCCCCCCEEECCHHHHHHHHHHHHHHCCCCHHE
LDATIFLADKADFAGMNAAWDAWVVDGNAPVRCTVEAKLMNPDYKVEIKIIAAI
EEEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]