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The map label for this gene is rnfE [H]

Identifier: 170024247

GI number: 170024247

Start: 2240379

End: 2241080

Strand: Direct

Name: rnfE [H]

Synonym: YPK_2012

Alternate gene names: 170024247

Gene position: 2240379-2241080 (Clockwise)

Preceding gene: 170024246

Following gene: 170024248

Centisome position: 47.77

GC content: 49.72

Gene sequence:

>702_bases
ATGAGTGAAGCGAAAAAACTGTTAGCACAAGGGTTGTGGAAAAATAACTCTGCGCTGGTGCAACTGTTGGGGCTCTGTCC
ATTGTTGGCAGTCTCTTCCACGGCAACCAACGCATTGGGGCTGGGGTTAGCGACCACGCTAGTCCTTGTGTGTACCAATA
CCGCAGTTTCCGCATTGCGCCGTTGGGTACCGTCTGAAATCCGTATTCCTATTTATGTCATGATTATTGCGTCGGTCGTC
AGTACCGTGCAAATGCTGATCAACGCTTATGCCTTTGGTTTATATCAATCATTGGGGATATTTATCCCATTGATTGTGAC
CAACTGTATCGTGATTGGCCGGGCAGAGGCCTATGCAGCGAAGAATCCGGTGGGGCTATCCGCATTGGATGGTTTTGCCA
TGGGGATGGGAGCAACCTGTGCCTTATTTGTTTTAGGGGCACTGCGCGAAATTTTGGGTAACGGTACCTTATTTGACGGC
GCAGACATGTTGCTAGGCAGTTGGGCTACAGTACTGCGCATTGACATCTTGCATTTAGATACCCCTTTCCTGCTGGCGAT
GTTGCCACCAGGTGCGTTTATCGGCCTGGGTTTACTGCTGGCCGGTAAATATGTCATTGACGAGAAAATGAAAGCGCGCA
AAGCCAATACACGGGTTAGCGTACCGCAACTTCAGGATGGAGATGCCGAGAAAGCCTTATGA

Upstream 100 bases:

>100_bases
TCACACCACGGGCTGTCGTGCGGGCAGTAAAAAATGCGGCACTGTATTTGCAAACACTGCCACCACAGCTTAGTCGCCTG
CCCTCCTGTGGAGAAGATCA

Downstream 100 bases:

>100_bases
ATAAAGAAAAACGTGTCACTATTTTGACCCGTCTGCGGGATAACAACCCACATCCAACGACTGAATTAGTTTACTCGACG
CCCTTTGAACTGCTTATTTC

Product: electron transport complex RsxE subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MSEAKKLLAQGLWKNNSALVQLLGLCPLLAVSSTATNALGLGLATTLVLVCTNTAVSALRRWVPSEIRIPIYVMIIASVV
STVQMLINAYAFGLYQSLGIFIPLIVTNCIVIGRAEAYAAKNPVGLSALDGFAMGMGATCALFVLGALREILGNGTLFDG
ADMLLGSWATVLRIDILHLDTPFLLAMLPPGAFIGLGLLLAGKYVIDEKMKARKANTRVSVPQLQDGDAEKAL

Sequences:

>Translated_233_residues
MSEAKKLLAQGLWKNNSALVQLLGLCPLLAVSSTATNALGLGLATTLVLVCTNTAVSALRRWVPSEIRIPIYVMIIASVV
STVQMLINAYAFGLYQSLGIFIPLIVTNCIVIGRAEAYAAKNPVGLSALDGFAMGMGATCALFVLGALREILGNGTLFDG
ADMLLGSWATVLRIDILHLDTPFLLAMLPPGAFIGLGLLLAGKYVIDEKMKARKANTRVSVPQLQDGDAEKAL
>Mature_232_residues
SEAKKLLAQGLWKNNSALVQLLGLCPLLAVSSTATNALGLGLATTLVLVCTNTAVSALRRWVPSEIRIPIYVMIIASVVS
TVQMLINAYAFGLYQSLGIFIPLIVTNCIVIGRAEAYAAKNPVGLSALDGFAMGMGATCALFVLGALREILGNGTLFDGA
DMLLGSWATVLRIDILHLDTPFLLAMLPPGAFIGLGLLLAGKYVIDEKMKARKANTRVSVPQLQDGDAEKAL

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=211, Percent_Identity=82.4644549763033, Blast_Score=334, Evalue=3e-93,
Organism=Escherichia coli, GI1787914, Length=157, Percent_Identity=34.3949044585987, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR010968 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 24602; Mature: 24470

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEAKKLLAQGLWKNNSALVQLLGLCPLLAVSSTATNALGLGLATTLVLVCTNTAVSALR
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RWVPSEIRIPIYVMIIASVVSTVQMLINAYAFGLYQSLGIFIPLIVTNCIVIGRAEAYAA
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHC
KNPVGLSALDGFAMGMGATCALFVLGALREILGNGTLFDGADMLLGSWATVLRIDILHLD
CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHHHCC
TPFLLAMLPPGAFIGLGLLLAGKYVIDEKMKARKANTRVSVPQLQDGDAEKAL
CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SEAKKLLAQGLWKNNSALVQLLGLCPLLAVSSTATNALGLGLATTLVLVCTNTAVSALR
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RWVPSEIRIPIYVMIIASVVSTVQMLINAYAFGLYQSLGIFIPLIVTNCIVIGRAEAYAA
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHC
KNPVGLSALDGFAMGMGATCALFVLGALREILGNGTLFDGADMLLGSWATVLRIDILHLD
CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHHHCC
TPFLLAMLPPGAFIGLGLLLAGKYVIDEKMKARKANTRVSVPQLQDGDAEKAL
CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA