| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
Click here to switch to the map view.
The map label for this gene is 170023534
Identifier: 170023534
GI number: 170023534
Start: 1415834
End: 1418254
Strand: Direct
Name: 170023534
Synonym: YPK_1288
Alternate gene names: NA
Gene position: 1415834-1418254 (Clockwise)
Preceding gene: 170023531
Following gene: 170023535
Centisome position: 30.19
GC content: 39.2
Gene sequence:
>2421_bases ATGAGATATAATCGTAACCATATGCTAACGTTAATGTTCTCTTTATTAATTTTTGATGCCTATGCAAATGAACCCAAAGT CTGTTTTTATATGGATGATGACTATAATGGTGAGTCTCTCTGCGCGGCTCAAGGGAACTCAGTTGCCAGTATTCCGGATA AATGGAATGATCGCATATCCTCAATTTCCATTCCCCACGGTTTAGTTGTCACCGTCTATGAAGATGTCGATTTTTTGGGC GCTTCTCGGTCTTTTGAAGCCGATGTGGATTTGGTTTCAGATAAGGATTTGATATATTTAAATGATAATATAAGTGCATT TAAAATAAAAAAGGCAGTTTGTTTTTATGGCGAAAGTAACTTTACAGGTGACTCGTTGTGCTTATCTGGTGGTGAGCAAT TTGACTTGTATCGTGGTAACTATCCTGAAAGGAAGCAATCTCATTTGGTAAATCCCTTAAATGATGAGGTATATTCAATA AAAATCCCTCCAGGAATGCAAACTACAGTCTATGAGGACGATGATTATAATGGTAAATACTTTGTTTTGACAGAGGATTA CACACCTGATGATTTGTTGATAATAAGAATGAACAATAAAATCAGTAGCATGCGAGTTTCTCAAGATGAAGATTTCATTT GTGATCGTTTCTGTTCTATAAAAAAATCAATTAAATTTAAAATACAAAAAAGTTTTGGTTCCTATTGGATTGACCCACGA ATAAAATACAGAGATATATTGCTCGATTTTCAGTTATCTGACACTGATGATTATTCAATAAAATTTTTTGATGAGGGTCT TATAAAAGTTAAAAATTATAAATTATTTTTCTTTGATGGTAATGAAAAACATGGTGAGGGTTTTTTGTTTAATTTAAGTG ACAAAAGTAGTAATTTGTCATTTTTATTGCGTTTTAACGGTGGTTTTTTTAAAATTCAATTTGTTGAATCATTAAATAAT GAAATTGTTTATTCTTCTACTTTGATTGGAACGTTATTTGATGATGCTAACTCAGATGTTATTTTTGATATCAATAATGT AGATGCAAATAGCCCAATCGTTATTGATAAAATGGTATTAACCGTTGGTAAGGAGCATAACCGGGCTGAACGTAGTACTC TGGGGCTAGCGACTTGTTGGGCAATACCCATACTGAGTATTTATAACTATATTGTTCAGGGGCATTGCAATCAGGCAGAT AAGTTTGTCCATAATGCTGCCGATTTTTTTGGTAGCCCGGCAGATAAGATATTACAAGTATTTGGTTCCTCTTTACCCTT ACCCCCAAAAAATAGCAATGAAACATTAGATGACGAATCTGCATTAATTAATTTTATGTCTGATGTTAAAGGGACGTTAA CCTATATTACGACCAATATGGGCGAACACGCATTAACCGTACCGGCAACGGCACTCGCGTGCAAAGCCTCAATGCGAGAG AAAATCCTGCCTCATCTGCGTAACCGACGTGATCTTGCTCCAGGGTGTATCGATTGGACTTTGAGTATTTTAACCGATTT TACCTTGTTGTTTGGTGCCAGCATTGAGTATTGGAATAGCAAAAATTTTGGGCGAGTAATAGAAAATATTGTTCGCGAAG GGGAGATCGGTTCTGCTGTGGCAGATGTGGACACCGCATCACGTTTAATCGAGTCAGTTCAGGCCCATGTGGCTGAAGCG ACAGAGGTTGCAGATATCATTCATCTCAAAACGGCATTCGACTTTTCTCAACTCAGTTATGTCAGTTATGTACGTCATAC CGAAGAAGAAGTGGTATCGCCACAAAGCGCGCAGGCGCTACCCTTAGGGCGTTATGAACTGGCACTGGTAGATTACCATT TTATCGAGACGGTACCCAGAATTCGTCAGGATGGCCGTTGGGTAGAACGTCCAGATCTGCATTTTGATATTGAAGTGATT AGCGGGGTTCCCGAAGAAACTGATGCGAGCCGGCAAGTGCTTTTGCCGATTATCGAAGCGTGGCAGCATAGCTATCGCCA ACAAGAATTACTTTTTCACGCCTCGGATATTCTTCCAGAAAGTGGCCTGGCTCGATATGAAATTGAGCCGTTGTTAGAGG CTTCACGGCTGACCAGCGAAGTTGCAATCAGTTGGTTAAGGACTAGCCGTGATGATTTTGTTTACGTCGTAGTCCGTTTG GAGGGCGAGGTTATTAGCCTCACCATGGCAGTCGATATCAATATTAATGATGTGGGGGTTGCCGGGTCATTAACCAATCC AGATTATGTAATAACACCTAATGCAGAAGGGGCCGTCAGAGGCGCGGGTACGGCGGCGATCCGAGCATTAGCTGACCACT TTAAACGCAAAGGGAAAATATCCTTGGTCTCTTCTGTTATTAGTCAGCCATCCGCGATTGTGAAGAAAAAAGTGGGTTTT AGATTTATTGAAGAACTTTAA
Upstream 100 bases:
>100_bases AAATTATTTATTCTAATATAAAATTTTTAGGTCAGGAAATAACAATCTCTTATTTTTAAAATAATGGATTATTAATAATA GTTTAAAAGGTATATATATT
Downstream 100 bases:
>100_bases GGATATTGGGTACTCACTGATTGGAAAAAAAGATAAATTAAACATTATTATGTGCATTTTCTCAGTGACATTAGGCGCGG TTAGGTTTTTACAAAAATGT
Product: beta and gamma crystallin
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 806; Mature: 806
Protein sequence:
>806_residues MRYNRNHMLTLMFSLLIFDAYANEPKVCFYMDDDYNGESLCAAQGNSVASIPDKWNDRISSISIPHGLVVTVYEDVDFLG ASRSFEADVDLVSDKDLIYLNDNISAFKIKKAVCFYGESNFTGDSLCLSGGEQFDLYRGNYPERKQSHLVNPLNDEVYSI KIPPGMQTTVYEDDDYNGKYFVLTEDYTPDDLLIIRMNNKISSMRVSQDEDFICDRFCSIKKSIKFKIQKSFGSYWIDPR IKYRDILLDFQLSDTDDYSIKFFDEGLIKVKNYKLFFFDGNEKHGEGFLFNLSDKSSNLSFLLRFNGGFFKIQFVESLNN EIVYSSTLIGTLFDDANSDVIFDINNVDANSPIVIDKMVLTVGKEHNRAERSTLGLATCWAIPILSIYNYIVQGHCNQAD KFVHNAADFFGSPADKILQVFGSSLPLPPKNSNETLDDESALINFMSDVKGTLTYITTNMGEHALTVPATALACKASMRE KILPHLRNRRDLAPGCIDWTLSILTDFTLLFGASIEYWNSKNFGRVIENIVREGEIGSAVADVDTASRLIESVQAHVAEA TEVADIIHLKTAFDFSQLSYVSYVRHTEEEVVSPQSAQALPLGRYELALVDYHFIETVPRIRQDGRWVERPDLHFDIEVI SGVPEETDASRQVLLPIIEAWQHSYRQQELLFHASDILPESGLARYEIEPLLEASRLTSEVAISWLRTSRDDFVYVVVRL EGEVISLTMAVDININDVGVAGSLTNPDYVITPNAEGAVRGAGTAAIRALADHFKRKGKISLVSSVISQPSAIVKKKVGF RFIEEL
Sequences:
>Translated_806_residues MRYNRNHMLTLMFSLLIFDAYANEPKVCFYMDDDYNGESLCAAQGNSVASIPDKWNDRISSISIPHGLVVTVYEDVDFLG ASRSFEADVDLVSDKDLIYLNDNISAFKIKKAVCFYGESNFTGDSLCLSGGEQFDLYRGNYPERKQSHLVNPLNDEVYSI KIPPGMQTTVYEDDDYNGKYFVLTEDYTPDDLLIIRMNNKISSMRVSQDEDFICDRFCSIKKSIKFKIQKSFGSYWIDPR IKYRDILLDFQLSDTDDYSIKFFDEGLIKVKNYKLFFFDGNEKHGEGFLFNLSDKSSNLSFLLRFNGGFFKIQFVESLNN EIVYSSTLIGTLFDDANSDVIFDINNVDANSPIVIDKMVLTVGKEHNRAERSTLGLATCWAIPILSIYNYIVQGHCNQAD KFVHNAADFFGSPADKILQVFGSSLPLPPKNSNETLDDESALINFMSDVKGTLTYITTNMGEHALTVPATALACKASMRE KILPHLRNRRDLAPGCIDWTLSILTDFTLLFGASIEYWNSKNFGRVIENIVREGEIGSAVADVDTASRLIESVQAHVAEA TEVADIIHLKTAFDFSQLSYVSYVRHTEEEVVSPQSAQALPLGRYELALVDYHFIETVPRIRQDGRWVERPDLHFDIEVI SGVPEETDASRQVLLPIIEAWQHSYRQQELLFHASDILPESGLARYEIEPLLEASRLTSEVAISWLRTSRDDFVYVVVRL EGEVISLTMAVDININDVGVAGSLTNPDYVITPNAEGAVRGAGTAAIRALADHFKRKGKISLVSSVISQPSAIVKKKVGF RFIEEL >Mature_806_residues MRYNRNHMLTLMFSLLIFDAYANEPKVCFYMDDDYNGESLCAAQGNSVASIPDKWNDRISSISIPHGLVVTVYEDVDFLG ASRSFEADVDLVSDKDLIYLNDNISAFKIKKAVCFYGESNFTGDSLCLSGGEQFDLYRGNYPERKQSHLVNPLNDEVYSI KIPPGMQTTVYEDDDYNGKYFVLTEDYTPDDLLIIRMNNKISSMRVSQDEDFICDRFCSIKKSIKFKIQKSFGSYWIDPR IKYRDILLDFQLSDTDDYSIKFFDEGLIKVKNYKLFFFDGNEKHGEGFLFNLSDKSSNLSFLLRFNGGFFKIQFVESLNN EIVYSSTLIGTLFDDANSDVIFDINNVDANSPIVIDKMVLTVGKEHNRAERSTLGLATCWAIPILSIYNYIVQGHCNQAD KFVHNAADFFGSPADKILQVFGSSLPLPPKNSNETLDDESALINFMSDVKGTLTYITTNMGEHALTVPATALACKASMRE KILPHLRNRRDLAPGCIDWTLSILTDFTLLFGASIEYWNSKNFGRVIENIVREGEIGSAVADVDTASRLIESVQAHVAEA TEVADIIHLKTAFDFSQLSYVSYVRHTEEEVVSPQSAQALPLGRYELALVDYHFIETVPRIRQDGRWVERPDLHFDIEVI SGVPEETDASRQVLLPIIEAWQHSYRQQELLFHASDILPESGLARYEIEPLLEASRLTSEVAISWLRTSRDDFVYVVVRL EGEVISLTMAVDININDVGVAGSLTNPDYVITPNAEGAVRGAGTAAIRALADHFKRKGKISLVSSVISQPSAIVKKKVGF RFIEEL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 90763; Mature: 90763
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: PS50915 CRYSTALLIN_BETA_GAMMA L=RR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRYNRNHMLTLMFSLLIFDAYANEPKVCFYMDDDYNGESLCAAQGNSVASIPDKWNDRIS CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEECCCCEECCCCHHCCCHH SISIPHGLVVTVYEDVDFLGASRSFEADVDLVSDKDLIYLNDNISAFKIKKAVCFYGESN EECCCCCEEEEEEECCHHCCCCCCCCCCEEEECCCCEEEECCCCCEEEEEEEEEEECCCC FTGDSLCLSGGEQFDLYRGNYPERKQSHLVNPLNDEVYSIKIPPGMQTTVYEDDDYNGKY CCCCCEEECCCCEEEEECCCCCCHHHHHCCCCCCCCEEEEECCCCCCEEEEECCCCCCEE FVLTEDYTPDDLLIIRMNNKISSMRVSQDEDFICDRFCSIKKSIKFKIQKSFGSYWIDPR EEEECCCCCCCEEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHEEEEEECCCCEECCCC IKYRDILLDFQLSDTDDYSIKFFDEGLIKVKNYKLFFFDGNEKHGEGFLFNLSDKSSNLS EEEEEEEEEEEECCCCCCEEEEECCCEEEEEEEEEEEEECCCCCCCEEEEEECCCCCCEE FLLRFNGGFFKIQFVESLNNEIVYSSTLIGTLFDDANSDVIFDINNVDANSPIVIDKMVL EEEEECCCEEEEEEECCCCCCEEEEEEEEEEEECCCCCCEEEEECCCCCCCCEEEEHHHH TVGKEHNRAERSTLGLATCWAIPILSIYNYIVQGHCNQADKFVHNAADFFGSPADKILQV HHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHH FGSSLPLPPKNSNETLDDESALINFMSDVKGTLTYITTNMGEHALTVPATALACKASMRE HCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCEEECCHHHHHHHHHHHH KILPHLRNRRDLAPGCIDWTLSILTDFTLLFGASIEYWNSKNFGRVIENIVREGEIGSAV HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHCCCCCCHH ADVDTASRLIESVQAHVAEATEVADIIHLKTAFDFSQLSYVSYVRHTEEEVVSPQSAQAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHCCCCCCCCC PLGRYELALVDYHFIETVPRIRQDGRWVERPDLHFDIEVISGVPEETDASRQVLLPIIEA CCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEHEECCCCCCCCCCHHHHHHHHHH WQHSYRQQELLFHASDILPESGLARYEIEPLLEASRLTSEVAISWLRTSRDDFVYVVVRL HHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE EGEVISLTMAVDININDVGVAGSLTNPDYVITPNAEGAVRGAGTAAIRALADHFKRKGKI CCCEEEEEEEEEEEECCCCEECCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCH SLVSSVISQPSAIVKKKVGFRFIEEL HHHHHHHCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MRYNRNHMLTLMFSLLIFDAYANEPKVCFYMDDDYNGESLCAAQGNSVASIPDKWNDRIS CCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEECCCCEECCCCHHCCCHH SISIPHGLVVTVYEDVDFLGASRSFEADVDLVSDKDLIYLNDNISAFKIKKAVCFYGESN EECCCCCEEEEEEECCHHCCCCCCCCCCEEEECCCCEEEECCCCCEEEEEEEEEEECCCC FTGDSLCLSGGEQFDLYRGNYPERKQSHLVNPLNDEVYSIKIPPGMQTTVYEDDDYNGKY CCCCCEEECCCCEEEEECCCCCCHHHHHCCCCCCCCEEEEECCCCCCEEEEECCCCCCEE FVLTEDYTPDDLLIIRMNNKISSMRVSQDEDFICDRFCSIKKSIKFKIQKSFGSYWIDPR EEEECCCCCCCEEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHEEEEEECCCCEECCCC IKYRDILLDFQLSDTDDYSIKFFDEGLIKVKNYKLFFFDGNEKHGEGFLFNLSDKSSNLS EEEEEEEEEEEECCCCCCEEEEECCCEEEEEEEEEEEEECCCCCCCEEEEEECCCCCCEE FLLRFNGGFFKIQFVESLNNEIVYSSTLIGTLFDDANSDVIFDINNVDANSPIVIDKMVL EEEEECCCEEEEEEECCCCCCEEEEEEEEEEEECCCCCCEEEEECCCCCCCCEEEEHHHH TVGKEHNRAERSTLGLATCWAIPILSIYNYIVQGHCNQADKFVHNAADFFGSPADKILQV HHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHH FGSSLPLPPKNSNETLDDESALINFMSDVKGTLTYITTNMGEHALTVPATALACKASMRE HCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCEEECCHHHHHHHHHHHH KILPHLRNRRDLAPGCIDWTLSILTDFTLLFGASIEYWNSKNFGRVIENIVREGEIGSAV HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHCCCCCCHH ADVDTASRLIESVQAHVAEATEVADIIHLKTAFDFSQLSYVSYVRHTEEEVVSPQSAQAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHCCCCCCCCC PLGRYELALVDYHFIETVPRIRQDGRWVERPDLHFDIEVISGVPEETDASRQVLLPIIEA CCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEHEECCCCCCCCCCHHHHHHHHHH WQHSYRQQELLFHASDILPESGLARYEIEPLLEASRLTSEVAISWLRTSRDDFVYVVVRL HHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE EGEVISLTMAVDININDVGVAGSLTNPDYVITPNAEGAVRGAGTAAIRALADHFKRKGKI CCCEEEEEEEEEEEECCCCEECCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCH SLVSSVISQPSAIVKKKVGFRFIEEL HHHHHHHCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA