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The map label for this gene is 170023466

Identifier: 170023466

GI number: 170023466

Start: 1348700

End: 1349251

Strand: Direct

Name: 170023466

Synonym: YPK_1220

Alternate gene names: NA

Gene position: 1348700-1349251 (Clockwise)

Preceding gene: 170023465

Following gene: 170023468

Centisome position: 28.76

GC content: 44.38

Gene sequence:

>552_bases
ATGGCAAAGCTCAAAGCAAAACCTGAGCTGTTTTGCCGTGAGTATATTGTCGATTTGAACGTCACGCAGGCAGCTATACG
AGCGGGTTACAGCGCCAAAACCGCATATAGCAGCGGCCAACGTCTCTTTAAAGAAGAGGTGGTACAACAACGCATTAATG
AACTTAAGCACGATCGAATTAATCAATTGGGGGTTGATGCTAATTACGTCCTGCTACGACTCGTAGAAATCGACCAAATG
GACGCGGCGGATATATTTAATAAAGACATGAGTATCAAACCTATTCGTGAATGGCCGCAAGTTTGGCGACGTTATATCAG
TGGTTTCGACGTATCCGAACTGTTTGAAGGTAAAGAAATGGTCGGGATCCTAAAGAAAATTAAATGGCCTGACAAAGTTC
GTAACCTTGAATTGCTCGGCAAGCACATTGCTGTTCAGGCTTTTAAAGAAAATATTAGAAATGAAGTTACCGGCGCGAAC
GGGGGGCCGATGCAGATATCAAACCTATCCCCGGATGAAGCTGCAGAGGCCTACCGTAAAATGATGGAATAA

Upstream 100 bases:

>100_bases
AATCAACCAGACAAGATAAGTAAAACCACTCGTAATCACCTAAGCCACTGGCCTAATAGGCGTGCGACATTTCATTGTCA
AAATAAGGCAACCGTTAAAT

Downstream 100 bases:

>100_bases
ACCCCGCCGAAACGGGGCATTGTTCAGGGGATCAGTTGCTCCTGAGTGCAGCCATACAGCGCCGCCAGTTTTTCGCGTGT
GCGCTTCTGCGGTCGGTCGG

Product: terminase small subunit

Products: NA

Alternate protein names: Phage Terminase Small Subunit; Terminase Small Subunit Superfamily; Bacteriophage Terminase Small Subunit

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MAKLKAKPELFCREYIVDLNVTQAAIRAGYSAKTAYSSGQRLFKEEVVQQRINELKHDRINQLGVDANYVLLRLVEIDQM
DAADIFNKDMSIKPIREWPQVWRRYISGFDVSELFEGKEMVGILKKIKWPDKVRNLELLGKHIAVQAFKENIRNEVTGAN
GGPMQISNLSPDEAAEAYRKMME

Sequences:

>Translated_183_residues
MAKLKAKPELFCREYIVDLNVTQAAIRAGYSAKTAYSSGQRLFKEEVVQQRINELKHDRINQLGVDANYVLLRLVEIDQM
DAADIFNKDMSIKPIREWPQVWRRYISGFDVSELFEGKEMVGILKKIKWPDKVRNLELLGKHIAVQAFKENIRNEVTGAN
GGPMQISNLSPDEAAEAYRKMME
>Mature_182_residues
AKLKAKPELFCREYIVDLNVTQAAIRAGYSAKTAYSSGQRLFKEEVVQQRINELKHDRINQLGVDANYVLLRLVEIDQMD
AADIFNKDMSIKPIREWPQVWRRYISGFDVSELFEGKEMVGILKKIKWPDKVRNLELLGKHIAVQAFKENIRNEVTGANG
GPMQISNLSPDEAAEAYRKMME

Specific function: Unknown

COG id: COG3728

COG function: function code L; Phage terminase, small subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21032; Mature: 20900

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKLKAKPELFCREYIVDLNVTQAAIRAGYSAKTAYSSGQRLFKEEVVQQRINELKHDRI
CCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NQLGVDANYVLLRLVEIDQMDAADIFNKDMSIKPIREWPQVWRRYISGFDVSELFEGKEM
HHHCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
VGILKKIKWPDKVRNLELLGKHIAVQAFKENIRNEVTGANGGPMQISNLSPDEAAEAYRK
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHH
MME
HCC
>Mature Secondary Structure 
AKLKAKPELFCREYIVDLNVTQAAIRAGYSAKTAYSSGQRLFKEEVVQQRINELKHDRI
CCCCCCHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NQLGVDANYVLLRLVEIDQMDAADIFNKDMSIKPIREWPQVWRRYISGFDVSELFEGKEM
HHHCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
VGILKKIKWPDKVRNLELLGKHIAVQAFKENIRNEVTGANGGPMQISNLSPDEAAEAYRK
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHH
MME
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA