Click here to switch to the map view.

The map label for this gene is ybcQ [C]

Identifier: 170023460

GI number: 170023460

Start: 1345316

End: 1345741

Strand: Direct

Name: ybcQ [C]

Synonym: YPK_1214

Alternate gene names: 170023460

Gene position: 1345316-1345741 (Clockwise)

Preceding gene: 170023459

Following gene: 170023461

Centisome position: 28.69

GC content: 53.29

Gene sequence:

>426_bases
ATGCGCAGAAATATGCAACTTGTATTTGAACGGTGGGGCCGGTGGGCTGCGAGCGAGGAATATTGTTCACTGGTGGATTG
GCCTGCGATGTCAGTTGCGCCTCAGCAACTTCCCCAAGCAAGTGGGAAACCCAGTTGCACGGATGAGGACGGCCTTACGC
TCGATACTTGTATCGCGCACATGAGCACGGTGTTCCCGCAAGCCAGTCTGCTGATCCTAGGGCAGCGTTATATTGGGGGC
CACTCACTGCGGCAAATCGCTGACGTGATGGAAATAGATATCAACGTTGTGAGGAGGTCGCTACAGGCTTCGGAAGCGTT
TTTAGGCGGGTGCCTGGTTATGCTCGGTATTCGGCTTGAGATGGATCCCGAAGTGGTGGAACCGGAACCAGTTGCGTGTA
CACAAAAACCTATGCTAATCTTCTAA

Upstream 100 bases:

>100_bases
TATCCTGACTGACAAATAATTAGACAAACTCGGCGGTCGCTCTGGTTAATTTACAGATTAAATTTTGAAATCATGTTGAA
AAATGTTGAGGTCTGAAACT

Downstream 100 bases:

>100_bases
CATCTAAGATTGTAAGTTAAATTTATGACCTCAACATTTTAAGGCCTCGCCATTGTGCGGGGTCTTTCTGTTTGTGTGCT
GATGCTAAAGTACGAGAGTG

Product: hypothetical protein

Products: NA

Alternate protein names: Antitermination Protein Q; Antitermination Protein Phage Origin; Transcriptional Regulator; Antitermination Protein Q Phage Origin; Phage Antiterminator; APSE-2 Prophage; Phage Antitermination Protein; Antitermination Q Family Protein

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MRRNMQLVFERWGRWAASEEYCSLVDWPAMSVAPQQLPQASGKPSCTDEDGLTLDTCIAHMSTVFPQASLLILGQRYIGG
HSLRQIADVMEIDINVVRRSLQASEAFLGGCLVMLGIRLEMDPEVVEPEPVACTQKPMLIF

Sequences:

>Translated_141_residues
MRRNMQLVFERWGRWAASEEYCSLVDWPAMSVAPQQLPQASGKPSCTDEDGLTLDTCIAHMSTVFPQASLLILGQRYIGG
HSLRQIADVMEIDINVVRRSLQASEAFLGGCLVMLGIRLEMDPEVVEPEPVACTQKPMLIF
>Mature_141_residues
MRRNMQLVFERWGRWAASEEYCSLVDWPAMSVAPQQLPQASGKPSCTDEDGLTLDTCIAHMSTVFPQASLLILGQRYIGG
HSLRQIADVMEIDINVVRRSLQASEAFLGGCLVMLGIRLEMDPEVVEPEPVACTQKPMLIF

Specific function: Positively Regulate Expression Of Some Phage Genes. Bacterial Host RNA Polymerase Modified By Antitermination Proteins Transcribes Through Termination Sites That Otherwise Prevent Expression Of The Regulated Genes (By Similarity). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15710; Mature: 15710

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
9.2 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
9.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRNMQLVFERWGRWAASEEYCSLVDWPAMSVAPQQLPQASGKPSCTDEDGLTLDTCIAH
CCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHH
MSTVFPQASLLILGQRYIGGHSLRQIADVMEIDINVVRRSLQASEAFLGGCLVMLGIRLE
HHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
MDPEVVEPEPVACTQKPMLIF
CCCCCCCCCCCCCCCCCEECC
>Mature Secondary Structure
MRRNMQLVFERWGRWAASEEYCSLVDWPAMSVAPQQLPQASGKPSCTDEDGLTLDTCIAH
CCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHH
MSTVFPQASLLILGQRYIGGHSLRQIADVMEIDINVVRRSLQASEAFLGGCLVMLGIRLE
HHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
MDPEVVEPEPVACTQKPMLIF
CCCCCCCCCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA