| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
Click here to switch to the map view.
The map label for this gene is 170023384
Identifier: 170023384
GI number: 170023384
Start: 1276470
End: 1277462
Strand: Direct
Name: 170023384
Synonym: YPK_1138
Alternate gene names: NA
Gene position: 1276470-1277462 (Clockwise)
Preceding gene: 170023383
Following gene: 170023385
Centisome position: 27.22
GC content: 49.14
Gene sequence:
>993_bases ATGAATGCTAAAACAGTCAACCAATCAGGTTGGGGGCAGCTTGCCAATTCAAATGTTTTCATTGAATTTATCGATACGGC TTTGCGCGGTTGTGCTCAGGTAATGTTTCAGAATAACCCATTGACCGGGCTATTCTTTTTCATCGCAATATTCATAGGTG CTTATGGTGAAGGTAACCCGGCGGTCGCTTATGGCTGTGTTCTGGGAACGCTGGTTGCCACACTTACCGGGTTGAGCATC CGTGACCGGAAATCATGGCGCTCAGGGTTATACGGTTATAACGGCTGTCTGGTGGGGGCCGCACTACCCACCTTTCTGAT CGCCACACCGGTGCTATGGGCCTGCATTGTCTTGGGCAGTATCGTTTCGGTGATTGTTACTGCCTGTATCGCTGATATTT TAAAAACCTGGAAAGTGGCTGCACTGACGGCACCTTTTGTCTTAACCACTTGGGTGGTCTTATTGGCCAGTTACGCCTTT GCTGGCCTACATAGCAGCGGATTACCGGCACCGGCTTTACCACAGCAACTGGTTTTAGAGGCTGGTAATACGTTTGCTGG CACCAACATTTTTGTCAGCATGTTCCATGGTGTTTCACAGGTGTTCTTATTCAGTAGCCTGATCGCGGGCATCCTGTTTG TTATCGGGTTGGCCATTGAATCACTTTGGGCAGCTGTTTTTGCTCTGTGCGGAGCCATATTGGCGATCCTCACCGCCACC CTCCTCGAGGCGGACCATCACAGCATTAATGCTGGGCTTTATGCCTTCAGTGCGGTACTTACCGCGATAGCACTGGGGTC GACGTTCAATAAACCCAGTTGGCGGGTTTTAGCTTATACCGTTATCGGGGTTATTTTTACGGTATTCGTTCAAGGCGCAC TGAACACCCTGTTATTACCTATCGGTATTCCTACTTTAACAATGCCTTTTGTATTGGCTTCGTGGCTATTCCTGGTACCG AATAAAGATGTCATGCCAGAGCACCGACAGTAG
Upstream 100 bases:
>100_bases GCCAGTGATCCAAGCAAGTGAAAGCAGCCACATCAATCAGTGATTCCGGGTGAGTGAGAGCAGCGAATACCGCTGCAGCT TCAAGTAGAAGGGTAAAATA
Downstream 100 bases:
>100_bases CGATTAAATTTAAGACATTCTTGGTTCTGAACATGTTACCGGTCATATTTTATCGATCATATAGACCTCAAATTATTGGC GTTATCGTGTTGTCAGCGAT
Product: urea transporter
Products: NA
Alternate protein names: Eukaryotic-Type Low-Affinity Urea Transporter
Number of amino acids: Translated: 330; Mature: 330
Protein sequence:
>330_residues MNAKTVNQSGWGQLANSNVFIEFIDTALRGCAQVMFQNNPLTGLFFFIAIFIGAYGEGNPAVAYGCVLGTLVATLTGLSI RDRKSWRSGLYGYNGCLVGAALPTFLIATPVLWACIVLGSIVSVIVTACIADILKTWKVAALTAPFVLTTWVVLLASYAF AGLHSSGLPAPALPQQLVLEAGNTFAGTNIFVSMFHGVSQVFLFSSLIAGILFVIGLAIESLWAAVFALCGAILAILTAT LLEADHHSINAGLYAFSAVLTAIALGSTFNKPSWRVLAYTVIGVIFTVFVQGALNTLLLPIGIPTLTMPFVLASWLFLVP NKDVMPEHRQ
Sequences:
>Translated_330_residues MNAKTVNQSGWGQLANSNVFIEFIDTALRGCAQVMFQNNPLTGLFFFIAIFIGAYGEGNPAVAYGCVLGTLVATLTGLSI RDRKSWRSGLYGYNGCLVGAALPTFLIATPVLWACIVLGSIVSVIVTACIADILKTWKVAALTAPFVLTTWVVLLASYAF AGLHSSGLPAPALPQQLVLEAGNTFAGTNIFVSMFHGVSQVFLFSSLIAGILFVIGLAIESLWAAVFALCGAILAILTAT LLEADHHSINAGLYAFSAVLTAIALGSTFNKPSWRVLAYTVIGVIFTVFVQGALNTLLLPIGIPTLTMPFVLASWLFLVP NKDVMPEHRQ >Mature_330_residues MNAKTVNQSGWGQLANSNVFIEFIDTALRGCAQVMFQNNPLTGLFFFIAIFIGAYGEGNPAVAYGCVLGTLVATLTGLSI RDRKSWRSGLYGYNGCLVGAALPTFLIATPVLWACIVLGSIVSVIVTACIADILKTWKVAALTAPFVLTTWVVLLASYAF AGLHSSGLPAPALPQQLVLEAGNTFAGTNIFVSMFHGVSQVFLFSSLIAGILFVIGLAIESLWAAVFALCGAILAILTAT LLEADHHSINAGLYAFSAVLTAIALGSTFNKPSWRVLAYTVIGVIFTVFVQGALNTLLLPIGIPTLTMPFVLASWLFLVP NKDVMPEHRQ
Specific function: Unknown
COG id: COG4413
COG function: function code E; Urea transporter
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI157694503, Length=312, Percent_Identity=29.8076923076923, Blast_Score=116, Evalue=2e-26, Organism=Homo sapiens, GI226371768, Length=320, Percent_Identity=28.4375, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI225690519, Length=320, Percent_Identity=28.4375, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI289802991, Length=320, Percent_Identity=28.4375, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI226371772, Length=320, Percent_Identity=28.4375, Blast_Score=110, Evalue=2e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35021; Mature: 35021
Theoretical pI: Translated: 7.82; Mature: 7.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAKTVNQSGWGQLANSNVFIEFIDTALRGCAQVMFQNNPLTGLFFFIAIFIGAYGEGNP CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCC AVAYGCVLGTLVATLTGLSIRDRKSWRSGLYGYNGCLVGAALPTFLIATPVLWACIVLGS HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH IVSVIVTACIADILKTWKVAALTAPFVLTTWVVLLASYAFAGLHSSGLPAPALPQQLVLE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH AGNTFAGTNIFVSMFHGVSQVFLFSSLIAGILFVIGLAIESLWAAVFALCGAILAILTAT CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLEADHHSINAGLYAFSAVLTAIALGSTFNKPSWRVLAYTVIGVIFTVFVQGALNTLLLP HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH IGIPTLTMPFVLASWLFLVPNKDVMPEHRQ CCCHHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MNAKTVNQSGWGQLANSNVFIEFIDTALRGCAQVMFQNNPLTGLFFFIAIFIGAYGEGNP CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCC AVAYGCVLGTLVATLTGLSIRDRKSWRSGLYGYNGCLVGAALPTFLIATPVLWACIVLGS HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH IVSVIVTACIADILKTWKVAALTAPFVLTTWVVLLASYAFAGLHSSGLPAPALPQQLVLE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH AGNTFAGTNIFVSMFHGVSQVFLFSSLIAGILFVIGLAIESLWAAVFALCGAILAILTAT CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLEADHHSINAGLYAFSAVLTAIALGSTFNKPSWRVLAYTVIGVIFTVFVQGALNTLLLP HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH IGIPTLTMPFVLASWLFLVPNKDVMPEHRQ CCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA