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The map label for this gene is ygdK [H]

Identifier: 170023298

GI number: 170023298

Start: 1186932

End: 1187372

Strand: Reverse

Name: ygdK [H]

Synonym: YPK_1049

Alternate gene names: 170023298

Gene position: 1187372-1186932 (Counterclockwise)

Preceding gene: 170023299

Following gene: 170023294

Centisome position: 25.32

GC content: 52.61

Gene sequence:

>441_bases
ATGATTGCCCCACACCCATTTGGTCGTGATATTACGGCTACTGACCTGATCGAGAAATTCAGTGCTCACAAACAGTGGGA
GGATCGCTACCGTCAGTTAATTCTGCTGGCCAAGCAACTCCCACCGTTGCAGGAGGCATGGAAAAAAAATGAACTGGAAT
TGACGGGTTGTGAAAACAGAGTCTGGCTCGGGCACCAACATTTGCCAGATGGCACTTTGCATTTCTATGGCGACAGTGAA
GGCCGCATAGTACGCGGGCTGCTAGCGGTGATTCTAACCGCCGTGGAGGGTAAAACACCACAACAGGTGCTGGCCGCAGA
CCCCTTGGCCCTGTTTGAGCAACTGGGGCTGCGCCAACAACTCAGCACCTCGCGTGCTAATGGATTACAAGCACTGGCTC
AAGGTGTACAAACCATCGCGGCCAAATACGCAGAACGATAA

Upstream 100 bases:

>100_bases
ATTCCAGTTGCAGGACAGCGTCAATAAAGTACACGAAGGCAGTCAACACAAGCAGCTTGAAGAATGGCGGGTATCAATAT
ACAAACAAGATGAGAATATG

Downstream 100 bases:

>100_bases
TTATTCAGAACAATAAGTTGCAGAGTAACAATCGATTATGACGCAGTGGCGGCTGACTCGTGCTGACGGGCCGCTTTAGC
CATCATCTTCTTCAATACAT

Product: cysteine desulfurase, sulfur acceptor subunit CsdE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MIAPHPFGRDITATDLIEKFSAHKQWEDRYRQLILLAKQLPPLQEAWKKNELELTGCENRVWLGHQHLPDGTLHFYGDSE
GRIVRGLLAVILTAVEGKTPQQVLAADPLALFEQLGLRQQLSTSRANGLQALAQGVQTIAAKYAER

Sequences:

>Translated_146_residues
MIAPHPFGRDITATDLIEKFSAHKQWEDRYRQLILLAKQLPPLQEAWKKNELELTGCENRVWLGHQHLPDGTLHFYGDSE
GRIVRGLLAVILTAVEGKTPQQVLAADPLALFEQLGLRQQLSTSRANGLQALAQGVQTIAAKYAER
>Mature_146_residues
MIAPHPFGRDITATDLIEKFSAHKQWEDRYRQLILLAKQLPPLQEAWKKNELELTGCENRVWLGHQHLPDGTLHFYGDSE
GRIVRGLLAVILTAVEGKTPQQVLAADPLALFEQLGLRQQLSTSRANGLQALAQGVQTIAAKYAER

Specific function: Unknown

COG id: COG2166

COG function: function code R; SufE protein probably involved in Fe-S center assembly

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sufE family [H]

Homologues:

Organism=Escherichia coli, GI1789176, Length=135, Percent_Identity=58.5185185185185, Blast_Score=166, Evalue=8e-43,
Organism=Escherichia coli, GI1787969, Length=117, Percent_Identity=32.4786324786325, Blast_Score=80, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017763
- InterPro:   IPR003808 [H]

Pfam domain/function: PF02657 SufE [H]

EC number: NA

Molecular weight: Translated: 16346; Mature: 16346

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAPHPFGRDITATDLIEKFSAHKQWEDRYRQLILLAKQLPPLQEAWKKNELELTGCENR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEECCCCC
VWLGHQHLPDGTLHFYGDSEGRIVRGLLAVILTAVEGKTPQQVLAADPLALFEQLGLRQQ
EEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCHHHH
LSTSRANGLQALAQGVQTIAAKYAER
HHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIAPHPFGRDITATDLIEKFSAHKQWEDRYRQLILLAKQLPPLQEAWKKNELELTGCENR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEECCCCC
VWLGHQHLPDGTLHFYGDSEGRIVRGLLAVILTAVEGKTPQQVLAADPLALFEQLGLRQQ
EEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCHHHH
LSTSRANGLQALAQGVQTIAAKYAER
HHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]