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The map label for this gene is xerD [C]

Identifier: 170023131

GI number: 170023131

Start: 1008807

End: 1009748

Strand: Reverse

Name: xerD [C]

Synonym: YPK_0882

Alternate gene names: 170023131

Gene position: 1009748-1008807 (Counterclockwise)

Preceding gene: 170023132

Following gene: 170023130

Centisome position: 21.53

GC content: 39.38

Gene sequence:

>942_bases
ATGGCATATGAGCAATTCATTATGAATGAATCTGCAAATAAGCCTTGGATGGGTGATAAACCAGATACCCGATGCCTAAA
AGAATTAACTGACCTATGGTTTGCTTTACATGGACGCTCACTTTCCTCTGGAGATAAGATTCACAGCAAACTGAGATTGG
TTGCAGATGCATTAGGTGATCCAATAGCTGTAAATTTCACGGCAAAGGACTTCGCCCATTACCGCAACAAAAGACTGACA
GGTGAAATAAAACTAGATGAGCGCTTTGTTAAAGGCTCTAGCCCTGTAACCATAAATCTAGACCATTCATATCTCAGCGC
TATGTTTGAAGAATTGATACGTTTGGAAGAATGGAAATTACCTAATCCGCTTGAAAAATTGCGTAAATTTACGATTAGTG
AAAGAGAAATGGCGTGGCTTGACATTGATCAGATTAATGAGCTTTTGGCGGCTACAAGTCATCATATTGATATGAATCGT
GTTATCCGGGTTTGTCTATGTACCGGGGCGCGCTGGAGTGAGTCACAGTTTTTAACAAAGAATCAATTAAGCCCAAACAA
AATTACCTTTACTAAAACCAAGGGCAAAAAAAATAGAACGGTACCTATTTCTGCTGATTTTTATGAAGAGCTGAAAGAGA
TTAAAAGTGAGCGGTTATTTGGTGACTGTTACTACCCTTTCTTAACCATTTTGAATAACTCATCAATTGTTTTACCAAAA
GGGCAGTTAACACATGTTCTCAGACACTCATTTGCGGCGCATTTTATGATGAATGGCGGCAACATTTTGGTACTTCAAAA
GATACTCGGACATCATGATATAAACATGACTATGCGTTATGCCCATTTCGCACCTGAGCATTTAGATACAGCAGTAACGT
TTAACCCCCTCGCCATGGTAAATAATGGCGGCAAATTGGCGGCAAAAAATGGTACTCACTAG

Upstream 100 bases:

>100_bases
AGTAAGAAAGCTAACAACAGGTAAGTGGTTATGCGAATGCTATCCGAGTGGTCGCGATAAACGCAGGATCCGTAAAAGTT
TTCCCACAAAGGGCGAAGCT

Downstream 100 bases:

>100_bases
TATTCACTGATATTCACTGATACCACAAGTCATTGAATAAACTACAACCTTATGATTTATAAATCTTATTATGAAAATTG
GTCTCTTTTACGGCTCCAGC

Product: integrase family protein

Products: NA

Alternate protein names: Integrase Family Protein; Phage Integrase; Bacteriophage Integrase; Phage Integrase Family Protein; Site-Specific Recombinase Phage Integrase Family; Phage Integrase Family Site Specific Recombinase; P2-Like Phage Integrase; Integrase Bacteriophage Origin; Fels-2 Prophage Protein; DNA Integration/Recombination/Invertion Protein; Phage Integrase Family Site-Specific Recombinase; Bacteriophage

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MAYEQFIMNESANKPWMGDKPDTRCLKELTDLWFALHGRSLSSGDKIHSKLRLVADALGDPIAVNFTAKDFAHYRNKRLT
GEIKLDERFVKGSSPVTINLDHSYLSAMFEELIRLEEWKLPNPLEKLRKFTISEREMAWLDIDQINELLAATSHHIDMNR
VIRVCLCTGARWSESQFLTKNQLSPNKITFTKTKGKKNRTVPISADFYEELKEIKSERLFGDCYYPFLTILNNSSIVLPK
GQLTHVLRHSFAAHFMMNGGNILVLQKILGHHDINMTMRYAHFAPEHLDTAVTFNPLAMVNNGGKLAAKNGTH

Sequences:

>Translated_313_residues
MAYEQFIMNESANKPWMGDKPDTRCLKELTDLWFALHGRSLSSGDKIHSKLRLVADALGDPIAVNFTAKDFAHYRNKRLT
GEIKLDERFVKGSSPVTINLDHSYLSAMFEELIRLEEWKLPNPLEKLRKFTISEREMAWLDIDQINELLAATSHHIDMNR
VIRVCLCTGARWSESQFLTKNQLSPNKITFTKTKGKKNRTVPISADFYEELKEIKSERLFGDCYYPFLTILNNSSIVLPK
GQLTHVLRHSFAAHFMMNGGNILVLQKILGHHDINMTMRYAHFAPEHLDTAVTFNPLAMVNNGGKLAAKNGTH
>Mature_312_residues
AYEQFIMNESANKPWMGDKPDTRCLKELTDLWFALHGRSLSSGDKIHSKLRLVADALGDPIAVNFTAKDFAHYRNKRLTG
EIKLDERFVKGSSPVTINLDHSYLSAMFEELIRLEEWKLPNPLEKLRKFTISEREMAWLDIDQINELLAATSHHIDMNRV
IRVCLCTGARWSESQFLTKNQLSPNKITFTKTKGKKNRTVPISADFYEELKEIKSERLFGDCYYPFLTILNNSSIVLPKG
QLTHVLRHSFAAHFMMNGGNILVLQKILGHHDINMTMRYAHFAPEHLDTAVTFNPLAMVNNGGKLAAKNGTH

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35774; Mature: 35642

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYEQFIMNESANKPWMGDKPDTRCLKELTDLWFALHGRSLSSGDKIHSKLRLVADALGD
CCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
PIAVNFTAKDFAHYRNKRLTGEIKLDERFVKGSSPVTINLDHSYLSAMFEELIRLEEWKL
CEEEEEEHHHHHHHHCCCCEEEEEECHHEECCCCCEEEEECHHHHHHHHHHHHHHHHCCC
PNPLEKLRKFTISEREMAWLDIDQINELLAATSHHIDMNRVIRVCLCTGARWSESQFLTK
CCHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHH
NQLSPNKITFTKTKGKKNRTVPISADFYEELKEIKSERLFGDCYYPFLTILNNSSIVLPK
CCCCCCEEEEEECCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
GQLTHVLRHSFAAHFMMNGGNILVLQKILGHHDINMTMRYAHFAPEHLDTAVTFNPLAMV
HHHHHHHHHHHHHHEEECCCCEEEEEHHHCCCCCCEEEEEECCCHHHHCCEEEECCEEEE
NNGGKLAAKNGTH
ECCCEEECCCCCC
>Mature Secondary Structure 
AYEQFIMNESANKPWMGDKPDTRCLKELTDLWFALHGRSLSSGDKIHSKLRLVADALGD
CHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
PIAVNFTAKDFAHYRNKRLTGEIKLDERFVKGSSPVTINLDHSYLSAMFEELIRLEEWKL
CEEEEEEHHHHHHHHCCCCEEEEEECHHEECCCCCEEEEECHHHHHHHHHHHHHHHHCCC
PNPLEKLRKFTISEREMAWLDIDQINELLAATSHHIDMNRVIRVCLCTGARWSESQFLTK
CCHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHH
NQLSPNKITFTKTKGKKNRTVPISADFYEELKEIKSERLFGDCYYPFLTILNNSSIVLPK
CCCCCCEEEEEECCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
GQLTHVLRHSFAAHFMMNGGNILVLQKILGHHDINMTMRYAHFAPEHLDTAVTFNPLAMV
HHHHHHHHHHHHHHEEECCCCEEEEEHHHCCCCCCEEEEEECCCHHHHCCEEEECCEEEE
NNGGKLAAKNGTH
ECCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA