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The map label for this gene is intF [C]

Identifier: 170022865

GI number: 170022865

Start: 676659

End: 678089

Strand: Direct

Name: intF [C]

Synonym: YPK_0614

Alternate gene names: 170022865

Gene position: 676659-678089 (Clockwise)

Preceding gene: 170022864

Following gene: 170022866

Centisome position: 14.43

GC content: 46.47

Gene sequence:

>1431_bases
GTGAATCATTTTAAGTTTACCAAAGCCAGCATAGCGGCCCTGCCTCCAGATCCTGCTGGTGGACGACTGGAGTACAGGGA
TACCACCGTTAATGGTCTTATCCTGCGTATTGGCGCTTCTGGCGTGAAGAGTTTCTGCATCTCCCGTAAACGGAATGGAA
AGTTTATCCGGGAAACTCTTGGTCGCTTTCCTGATCTCAGCATTGAGAACGCCAGAGCCAAGGCCCTAGAGCTGCTTGGT
GAAGTGGCCACCAATGGCAAAAATCCCAATGATGTTCGTCGTGTTCATGCAATGAGCAAGGTCACACTGGAAGATGCTAT
ACAAACCTACATCGATAATCGCGGCCACCGCCTGAAGCCTGTCACGGCAAAACAATACCGCTCTATTCTTGGCAACTTCT
CTGGTGATTGGATGAATCAGCCTATGGCTAATATTAGCCGTGAGCGAGTTGAGGCCCGTCACAAAGCTGTTACTCAAGGC
TCAGTGTGGTTCGGTAAAGATAAATCGCTTCTCCGAGCCGGTGTAGGGTCAGGGAGTCGGGCACAAGCGGATCTATGGGC
TAGGGCATTAAGGGCTGTTTATCGCTTCTCCCACGACCACTACCGTGATGAGGAAGGTAAAACCCTCTTACCAGATCCAC
CGACGATGGTTCTCAGCACTAAGCGACAGTGGCATGGAACAGTAAGAAAAACAGAGCGAATCAGGACTTATGATCTTGGC
CGCTGGTTGAGTGCTGTTGACCAGGTAAGAAATATATCAGCAGACGAGAGGGACGATGTGGCGCTGTCGGTATGTGATGC
TATTGAAATGGCACTTTTTACTGGTCTAAGAAGATCGGAAGTATTTAATCTGACATGGGATAGGGTAAATATTGGCGGAC
GCTTTTTTTGGATAGATACCACTAAAAATGGCGATCCGCTTGAACTACCAATTACTGATACGCTGCTAAACCTTTTTCGT
AGGCGGCTCAAGCTTAAATTAGGCGAACAACATTATGTATTTCCCGGTCAGAAAGGAATTATCACTGAACCTCGCCGGAT
AATAGCCAGAATAACGGAAGTCACAATCCCTTCTCCTAACCCTGACGGATTATTGCCAATACCTTTCAAATGGCATGATG
CGCGGCGTACGTTTGGTACTGTTGCGGAGCTGGTGGGTGTTGGGTCATATATTCTTAAACGGTTGATGAACCACCGCACA
TTGCGAAGTGCTGATGTGACCCAAGGCTACTTACATTTTGGGGCTGATGAATTGCAGGAGCCAGCCAGAAAGGTAGAGCG
AGCTATATTGGAACATGCAGGTCTGGTAGAAAAAGCAGATGGTATTAATGCTCATTTATTATCAGCATTGGCGAATATGA
GTGATGAAGAAAAACGACGTTTATTATTTTCCTTGTCAGAATATAATCAAAATAATGGGAATTTAAATTAA

Upstream 100 bases:

>100_bases
TTGACACTGTATAAATACCCATAAATACTGGTTAATACCGCTCTGAGGTATCCCATAAGTATCCCAGAGCGACCAAGCGA
TTATTTGGGGATACCGTATT

Downstream 100 bases:

>100_bases
TGGATATCAAGAATGAAGACGGTGGCAAATTATGGATGATGGAATTTGTTGGGGAACTCTTACATTATGGGTTGGATGAA
TCGGACCTTGATATTTTCGA

Product: integrase family protein

Products: NA

Alternate protein names: Integrase; Integrase Family Protein; Phage-Related Integrase; Phage Related Integrase; Phage Integrase Family Protein; Site-Specific Recombinase Phage Integrase Family Protein; Site-Specific Recombinase Phage Integrase Family; Integrase Bacteriophage

Number of amino acids: Translated: 476; Mature: 476

Protein sequence:

>476_residues
MNHFKFTKASIAALPPDPAGGRLEYRDTTVNGLILRIGASGVKSFCISRKRNGKFIRETLGRFPDLSIENARAKALELLG
EVATNGKNPNDVRRVHAMSKVTLEDAIQTYIDNRGHRLKPVTAKQYRSILGNFSGDWMNQPMANISRERVEARHKAVTQG
SVWFGKDKSLLRAGVGSGSRAQADLWARALRAVYRFSHDHYRDEEGKTLLPDPPTMVLSTKRQWHGTVRKTERIRTYDLG
RWLSAVDQVRNISADERDDVALSVCDAIEMALFTGLRRSEVFNLTWDRVNIGGRFFWIDTTKNGDPLELPITDTLLNLFR
RRLKLKLGEQHYVFPGQKGIITEPRRIIARITEVTIPSPNPDGLLPIPFKWHDARRTFGTVAELVGVGSYILKRLMNHRT
LRSADVTQGYLHFGADELQEPARKVERAILEHAGLVEKADGINAHLLSALANMSDEEKRRLLFSLSEYNQNNGNLN

Sequences:

>Translated_476_residues
MNHFKFTKASIAALPPDPAGGRLEYRDTTVNGLILRIGASGVKSFCISRKRNGKFIRETLGRFPDLSIENARAKALELLG
EVATNGKNPNDVRRVHAMSKVTLEDAIQTYIDNRGHRLKPVTAKQYRSILGNFSGDWMNQPMANISRERVEARHKAVTQG
SVWFGKDKSLLRAGVGSGSRAQADLWARALRAVYRFSHDHYRDEEGKTLLPDPPTMVLSTKRQWHGTVRKTERIRTYDLG
RWLSAVDQVRNISADERDDVALSVCDAIEMALFTGLRRSEVFNLTWDRVNIGGRFFWIDTTKNGDPLELPITDTLLNLFR
RRLKLKLGEQHYVFPGQKGIITEPRRIIARITEVTIPSPNPDGLLPIPFKWHDARRTFGTVAELVGVGSYILKRLMNHRT
LRSADVTQGYLHFGADELQEPARKVERAILEHAGLVEKADGINAHLLSALANMSDEEKRRLLFSLSEYNQNNGNLN
>Mature_476_residues
MNHFKFTKASIAALPPDPAGGRLEYRDTTVNGLILRIGASGVKSFCISRKRNGKFIRETLGRFPDLSIENARAKALELLG
EVATNGKNPNDVRRVHAMSKVTLEDAIQTYIDNRGHRLKPVTAKQYRSILGNFSGDWMNQPMANISRERVEARHKAVTQG
SVWFGKDKSLLRAGVGSGSRAQADLWARALRAVYRFSHDHYRDEEGKTLLPDPPTMVLSTKRQWHGTVRKTERIRTYDLG
RWLSAVDQVRNISADERDDVALSVCDAIEMALFTGLRRSEVFNLTWDRVNIGGRFFWIDTTKNGDPLELPITDTLLNLFR
RRLKLKLGEQHYVFPGQKGIITEPRRIIARITEVTIPSPNPDGLLPIPFKWHDARRTFGTVAELVGVGSYILKRLMNHRT
LRSADVTQGYLHFGADELQEPARKVERAILEHAGLVEKADGINAHLLSALANMSDEEKRRLLFSLSEYNQNNGNLN

Specific function: Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From The Host Genome. [C]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI2367104, Length=450, Percent_Identity=24.2222222222222, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53796; Mature: 53796

Theoretical pI: Translated: 10.45; Mature: 10.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHFKFTKASIAALPPDPAGGRLEYRDTTVNGLILRIGASGVKSFCISRKRNGKFIRETL
CCCCCCCHHHEEECCCCCCCCEEEEECCCCCEEEEEECHHHHHHHHHHCCCCCCHHHHHH
GRFPDLSIENARAKALELLGEVATNGKNPNDVRRVHAMSKVTLEDAIQTYIDNRGHRLKP
CCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECC
VTAKQYRSILGNFSGDWMNQPMANISRERVEARHKAVTQGSVWFGKDKSLLRAGVGSGSR
CCHHHHHHHHCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHCCCCCCC
AQADLWARALRAVYRFSHDHYRDEEGKTLLPDPPTMVLSTKRQWHGTVRKTERIRTYDLG
HHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCEEEECCHHHCCHHHHHHHHHHHHHH
RWLSAVDQVRNISADERDDVALSVCDAIEMALFTGLRRSEVFNLTWDRVNIGGRFFWIDT
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHEEEEEECEEECCCEEEEEEE
TKNGDPLELPITDTLLNLFRRRLKLKLGEQHYVFPGQKGIITEPRRIIARITEVTIPSPN
CCCCCCEECCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCC
PDGLLPIPFKWHDARRTFGTVAELVGVGSYILKRLMNHRTLRSADVTQGYLHFGADELQE
CCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHH
PARKVERAILEHAGLVEKADGINAHLLSALANMSDEEKRRLLFSLSEYNQNNGNLN
HHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNHFKFTKASIAALPPDPAGGRLEYRDTTVNGLILRIGASGVKSFCISRKRNGKFIRETL
CCCCCCCHHHEEECCCCCCCCEEEEECCCCCEEEEEECHHHHHHHHHHCCCCCCHHHHHH
GRFPDLSIENARAKALELLGEVATNGKNPNDVRRVHAMSKVTLEDAIQTYIDNRGHRLKP
CCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECC
VTAKQYRSILGNFSGDWMNQPMANISRERVEARHKAVTQGSVWFGKDKSLLRAGVGSGSR
CCHHHHHHHHCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHCCCCCCC
AQADLWARALRAVYRFSHDHYRDEEGKTLLPDPPTMVLSTKRQWHGTVRKTERIRTYDLG
HHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCEEEECCHHHCCHHHHHHHHHHHHHH
RWLSAVDQVRNISADERDDVALSVCDAIEMALFTGLRRSEVFNLTWDRVNIGGRFFWIDT
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHEEEEEECEEECCCEEEEEEE
TKNGDPLELPITDTLLNLFRRRLKLKLGEQHYVFPGQKGIITEPRRIIARITEVTIPSPN
CCCCCCEECCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCC
PDGLLPIPFKWHDARRTFGTVAELVGVGSYILKRLMNHRTLRSADVTQGYLHFGADELQE
CCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHH
PARKVERAILEHAGLVEKADGINAHLLSALANMSDEEKRRLLFSLSEYNQNNGNLN
HHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA