Click here to switch to the map view.

The map label for this gene is ygfI [C]

Identifier: 170022732

GI number: 170022732

Start: 533546

End: 534358

Strand: Reverse

Name: ygfI [C]

Synonym: YPK_0481

Alternate gene names: 170022732

Gene position: 534358-533546 (Counterclockwise)

Preceding gene: 170022733

Following gene: 170022731

Centisome position: 11.39

GC content: 34.32

Gene sequence:

>813_bases
TTGACTAATGCAGCGGTGAAACTATTCACAACACCGCCCCCCATGAGTAGAAGCTTAAAAATACTGGAAGAGGAACTGGG
TTTTAAACTGTTCACACGTACAACATCGGGATTAAAACTGACATTGGAAGGCGCTGCTTTTTATCAAGAAATTTACCCAA
CCTACGTGCGATTAACTGAAATAACAAAGAATTACAAAAAGAATAAAAATGGTATTATAAATATCGCCACCTATCAGTTG
AATTCAGATCATGCTGGCGTGATATGTGATTACTTTATAAAAAAAGGTAATTTTAACATTGAGTTAAGAGAGAATATTGG
TGATATCAGTCAAATGGATATCGTCATCAGTACCAAAGAGATAAAAGGCTATGATTTCGATACTGAGCTAACCGCCAGTT
GTGAAATAAAATTACTGTATGCATCACATTTGAATGACTTGCCTGATAGAGTTGAATATTTAAAGAAACTGCCCTTTATA
CAAAGTAGTATTTTTTGCTCTTCCTGCTGCTTTAAGCGATTTTCACACAACCTAATACAACAAGGCTACTCAGGGAATGT
ACTGCGTATTGATGATGCCAGAGTTCGCCATGAAATAATTAAAAAAGGGGCAGGAATCTCGCTATCCACAAATTATTTTT
TTGATAAAAAAAAGATAAGTCACTCTACCGAAATAAGTTTTATATCAGATATCAACTTTGACATTACCTATTACATTTAC
TTTAAAAGCTCAGTAATTAACAAAGAATTTTTCATCCAATACATAACGAATAATTCACTCCTGCAGTGGCAGAAGGCAGA
GAAAAAACACTAA

Upstream 100 bases:

>100_bases
TGTACATCTACATATCGCGACAACTAATAGTAAATAAGTGGTGCATATGTTTATATCAAAAAATTTACTCGTATTCTTTA
CTACGGTTCAAGAGGGATCG

Downstream 100 bases:

>100_bases
GTCAGATGCAACACGTAGTTAAATACAATTTGTTTAACTAAAATTTAGTTAAACAGAAGATAACAATAAAAACACCAAAC
AGAAACGATAGCGCGTCATT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: LysR Family Transcriptional Regulator

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MTNAAVKLFTTPPPMSRSLKILEEELGFKLFTRTTSGLKLTLEGAAFYQEIYPTYVRLTEITKNYKKNKNGIINIATYQL
NSDHAGVICDYFIKKGNFNIELRENIGDISQMDIVISTKEIKGYDFDTELTASCEIKLLYASHLNDLPDRVEYLKKLPFI
QSSIFCSSCCFKRFSHNLIQQGYSGNVLRIDDARVRHEIIKKGAGISLSTNYFFDKKKISHSTEISFISDINFDITYYIY
FKSSVINKEFFIQYITNNSLLQWQKAEKKH

Sequences:

>Translated_270_residues
MTNAAVKLFTTPPPMSRSLKILEEELGFKLFTRTTSGLKLTLEGAAFYQEIYPTYVRLTEITKNYKKNKNGIINIATYQL
NSDHAGVICDYFIKKGNFNIELRENIGDISQMDIVISTKEIKGYDFDTELTASCEIKLLYASHLNDLPDRVEYLKKLPFI
QSSIFCSSCCFKRFSHNLIQQGYSGNVLRIDDARVRHEIIKKGAGISLSTNYFFDKKKISHSTEISFISDINFDITYYIY
FKSSVINKEFFIQYITNNSLLQWQKAEKKH
>Mature_269_residues
TNAAVKLFTTPPPMSRSLKILEEELGFKLFTRTTSGLKLTLEGAAFYQEIYPTYVRLTEITKNYKKNKNGIINIATYQLN
SDHAGVICDYFIKKGNFNIELRENIGDISQMDIVISTKEIKGYDFDTELTASCEIKLLYASHLNDLPDRVEYLKKLPFIQ
SSIFCSSCCFKRFSHNLIQQGYSGNVLRIDDARVRHEIIKKGAGISLSTNYFFDKKKISHSTEISFISDINFDITYYIYF
KSSVINKEFFIQYITNNSLLQWQKAEKKH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31202; Mature: 31071

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNAAVKLFTTPPPMSRSLKILEEELGFKLFTRTTSGLKLTLEGAAFYQEIYPTYVRLTE
CCCCEEEEEECCCCCHHHHHHHHHHCCEEEEEECCCCEEEEECHHHHHHHHHHHHHHHHH
ITKNYKKNKNGIINIATYQLNSDHAGVICDYFIKKGNFNIELRENIGDISQMDIVISTKE
HHHHHHCCCCCEEEEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEEEEEEEE
IKGYDFDTELTASCEIKLLYASHLNDLPDRVEYLKKLPFIQSSIFCSSCCFKRFSHNLIQ
CCCCCCCCCEECEEEEEEEEHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
QGYSGNVLRIDDARVRHEIIKKGAGISLSTNYFFDKKKISHSTEISFISDINFDITYYIY
CCCCCCEEEECHHHHHHHHHHCCCCCEEECCEEECHHHCCCCCCEEEEEECCCEEEEEEE
FKSSVINKEFFIQYITNNSLLQWQKAEKKH
EECCCCCHHHEEEEECCCCEEEEHHHHCCC
>Mature Secondary Structure 
TNAAVKLFTTPPPMSRSLKILEEELGFKLFTRTTSGLKLTLEGAAFYQEIYPTYVRLTE
CCCEEEEEECCCCCHHHHHHHHHHCCEEEEEECCCCEEEEECHHHHHHHHHHHHHHHHH
ITKNYKKNKNGIINIATYQLNSDHAGVICDYFIKKGNFNIELRENIGDISQMDIVISTKE
HHHHHHCCCCCEEEEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCCEEEEEEEEE
IKGYDFDTELTASCEIKLLYASHLNDLPDRVEYLKKLPFIQSSIFCSSCCFKRFSHNLIQ
CCCCCCCCCEECEEEEEEEEHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
QGYSGNVLRIDDARVRHEIIKKGAGISLSTNYFFDKKKISHSTEISFISDINFDITYYIY
CCCCCCEEEECHHHHHHHHHHCCCCCEEECCEEECHHHCCCCCCEEEEEECCCEEEEEEE
FKSSVINKEFFIQYITNNSLLQWQKAEKKH
EECCCCCHHHEEEEECCCCEEEEHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA